Strain Fitness in Pseudomonas putida KT2440 around PP_3273

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,708,038	+		PP_3272	0.47	-2.3
3,708,038	+		PP_3272	0.47	-3.2
3,708,044	+		PP_3272	0.47	+0.1
3,708,044	+		PP_3272	0.47	-1.6
3,708,044	+		PP_3272	0.47	-0.4
3,708,045	-		PP_3272	0.47	+0.1
3,708,045	-		PP_3272	0.47	-2.3
3,708,045	-		PP_3272	0.47	-1.1
3,708,065	+		PP_3272	0.48	+0.1
3,708,124	-		PP_3272	0.52	+0.0
3,708,325	+		PP_3272	0.65	+0.2
3,708,380	+		PP_3272	0.68	+0.2
3,708,380	+		PP_3272	0.68	-0.5
3,708,380	+		PP_3272	0.68	+1.0
3,708,381	-		PP_3272	0.68	-0.0
3,708,381	-		PP_3272	0.68	+1.2
3,708,381	-		PP_3272	0.68	-1.3
3,708,381	-		PP_3272	0.68	-2.9
3,708,416	+		PP_3272	0.71	+0.1
3,708,416	+		PP_3272	0.71	+0.8
3,708,417	-		PP_3272	0.71	-0.6
3,708,422	+		PP_3272	0.71	+1.0
3,708,422	+		PP_3272	0.71	+0.2
3,708,423	-		PP_3272	0.71	+0.8
3,708,482	+		PP_3272	0.75	+1.3
3,708,483	-		PP_3272	0.75	-0.9
3,708,572	+		PP_3272	0.81	-0.1
3,708,572	+		PP_3272	0.81	-2.4
3,708,572	+		PP_3272	0.81	+0.3
3,708,572	+		PP_3272	0.81	-0.1
3,708,572	+		PP_3272	0.81	-0.9
3,708,572	+		PP_3272	0.81	+0.1
3,708,572	+		PP_3272	0.81	-2.2
3,708,573	-		PP_3272	0.81	+0.8
3,708,573	-		PP_3272	0.81	-1.9
3,708,573	-		PP_3272	0.81	-2.4
3,708,576	+		PP_3272	0.81	+1.3
3,708,585	+		PP_3272	0.82	+0.8
3,708,647	+		PP_3272	0.85	-1.7
3,708,647	+		PP_3272	0.85	-0.1
3,708,647	+		PP_3272	0.85	-2.6
3,708,648	-		PP_3272	0.86	-2.4
3,708,662	+		PP_3272	0.86	+1.0
3,708,774	-				-1.6
3,708,774	-				-0.0
3,708,937	+		PP_3273	0.22	-2.8
3,708,937	+		PP_3273	0.22	-3.1
3,708,937	+		PP_3273	0.22	-2.0
3,708,937	+		PP_3273	0.22	-0.4
3,708,937	+		PP_3273	0.22	+0.7
3,708,938	-		PP_3273	0.22	-0.2
3,708,938	-		PP_3273	0.22	-2.8
3,708,938	-		PP_3273	0.22	-2.3
3,708,938	-		PP_3273	0.22	-2.4
3,708,938	-		PP_3273	0.22	-0.6
3,708,938	-		PP_3273	0.22	+0.4
3,708,938	-		PP_3273	0.22	-0.9
3,709,069	+		PP_3273	0.64	+0.5
3,709,070	-		PP_3273	0.65	-1.4
3,709,070	-		PP_3273	0.65	-0.9
3,709,070	-		PP_3273	0.65	-0.7
3,709,201	+				-1.6
3,709,243	+				+0.2
3,709,243	+				-0.7
3,709,243	+				-0.1
3,709,244	-				+0.4
3,709,244	-				-0.8
3,709,260	+				-2.3
3,709,260	+				+1.2
3,709,285	-				-1.7
3,709,321	+				+0.7
3,709,321	+				+1.2
3,709,322	-				-1.4
3,709,384	+				-2.8
3,709,402	+				+1.4
3,709,492	+		PP_3274	0.16	+0.1
3,709,593	-		PP_3274	0.25	-1.1
3,709,593	-		PP_3274	0.25	-2.6
3,709,593	-		PP_3274	0.25	-2.9
3,709,598	+		PP_3274	0.26	-0.9
3,709,598	+		PP_3274	0.26	-0.1
3,709,598	+		PP_3274	0.26	+0.8
3,709,834	+				+0.9
3,709,835	-		PP_3274	0.48	-2.5
3,709,958	-		PP_3274	0.59	-1.6
3,709,958	-		PP_3274	0.59	-2.3
3,709,997	+		PP_3274	0.63	-0.6
3,709,998	-		PP_3274	0.63	-0.3
3,710,017	-		PP_3274	0.65	+1.2
3,710,043	+		PP_3274	0.67	-0.5
3,710,053	+		PP_3274	0.68	+1.0
3,710,054	-		PP_3274	0.68	+0.0
3,710,054	-		PP_3274	0.68	-1.6
3,710,093	+		PP_3274	0.72	+1.5