Strain Fitness in Pseudomonas putida KT2440 around PP_3270

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,703,042	+				+0.2
3,703,042	+				-2.8
3,703,042	+				+3.6
3,703,043	-				-1.0
3,703,043	-				-1.4
3,703,043	-				-2.3
3,703,182	+				+1.9
3,703,182	+				-0.1
3,703,182	+				-0.3
3,703,195	+				-1.7
3,703,195	+				+0.6
3,703,195	+				-0.5
3,703,196	-				+1.9
3,703,196	-				-1.7
3,703,196	-				-0.7
3,703,196	-				-2.1
3,703,208	-		PP_5596	0.11	-2.0
3,703,507	-				-1.1
3,703,507	-				+0.3
3,703,520	+				-0.4
3,703,521	-				-1.8
3,703,521	-				+0.0
3,703,521	-				-2.6
3,703,521	-				+0.2
3,703,590	+		PP_5597	0.38	-1.0
3,703,590	+		PP_5597	0.38	-1.7
3,703,591	-		PP_5597	0.39	-0.3
3,703,720	+				+3.9
3,703,720	+				+0.7
3,703,720	+				+0.5
3,703,728	-				+0.8
3,703,728	-				+0.5
3,703,818	+				-1.4
3,703,818	+				+0.5
3,703,818	+				-1.3
3,703,818	+				-0.7
3,703,819	-				-0.2
3,703,819	-				-1.9
3,703,850	+				-0.1
3,703,880	+				-1.8
3,703,941	+				+0.6
3,703,941	+				-0.5
3,703,941	+				-0.4
3,703,941	+				-1.6
3,703,942	-				-0.3
3,703,942	-				-0.0
3,703,984	+				-1.0
3,703,984	+				+0.6
3,703,984	+				+0.2
3,703,985	-				+0.5
3,703,985	-				-0.8
3,704,161	+		PP_3270	0.10	-3.0
3,704,161	+		PP_3270	0.10	-0.2
3,704,162	-		PP_3270	0.10	+0.3
3,704,162	-		PP_3270	0.10	-2.7
3,704,220	+				+1.9
3,704,221	-		PP_3270	0.13	-2.2
3,704,228	-		PP_3270	0.14	-0.9
3,704,247	-		PP_3270	0.15	-0.2
3,704,393	-		PP_3270	0.22	-3.0
3,704,410	-		PP_3270	0.23	-2.6
3,704,443	+		PP_3270	0.24	-3.6
3,704,443	+		PP_3270	0.24	-0.1
3,704,484	+		PP_3270	0.26	-0.3
3,704,485	-		PP_3270	0.26	-0.1
3,704,503	+		PP_3270	0.27	-2.1
3,704,764	+		PP_3270	0.40	+1.5
3,704,764	+		PP_3270	0.40	-2.3
3,704,765	-		PP_3270	0.40	-1.2
3,704,777	+		PP_3270	0.40	+1.9
3,704,777	+		PP_3270	0.40	-2.5
3,705,103	-		PP_3270	0.56	-1.3
3,705,128	+		PP_3270	0.57	-0.1
3,705,129	-		PP_3270	0.58	+0.5
3,705,160	+		PP_3270	0.59	+0.8
3,705,160	+		PP_3270	0.59	-0.8
3,705,160	+		PP_3270	0.59	-1.6
3,705,160	+		PP_3270	0.59	+0.1
3,705,161	-		PP_3270	0.59	-0.7
3,705,414	+		PP_3270	0.71	-1.3
3,705,414	+		PP_3270	0.71	+0.8
3,705,415	-		PP_3270	0.71	-1.1
3,705,433	+		PP_3270	0.72	-0.7
3,705,569	+		PP_3270	0.79	+0.5
3,705,607	-		PP_3270	0.81	+1.2
3,705,667	+		PP_3270	0.84	-0.9
3,705,749	-		PP_3270	0.88	-2.8
3,705,776	-		PP_3270	0.89	-0.2
3,705,856	+				-1.8
3,705,898	+				-0.1
3,705,898	+				-0.6
3,705,899	-				+0.6
3,705,906	+				-1.8
3,705,906	+				-2.4
3,705,907	-				+0.7
3,705,907	-				-1.7
3,706,040	+				-1.1
3,706,041	-				-1.8
3,706,059	-				-0.7
3,706,172	+		PP_3271	0.11	+0.6
3,706,172	+		PP_3271	0.11	+0.2
3,706,172	+		PP_3271	0.11	+1.0
3,706,172	+		PP_3271	0.11	-1.3
3,706,172	+		PP_3271	0.11	-2.5
3,706,172	+		PP_3271	0.11	-0.2
3,706,173	-		PP_3271	0.11	-1.6
3,706,173	-		PP_3271	0.11	+2.1
3,706,173	-		PP_3271	0.11	-1.6
3,706,173	-		PP_3271	0.11	-2.1
3,706,173	-		PP_3271	0.11	-0.4
3,706,173	-		PP_3271	0.11	+0.0
3,706,245	+		PP_3271	0.16	-0.2
3,706,248	-		PP_3271	0.17	-2.7
3,706,248	-		PP_3271	0.17	-1.6
3,706,248	-		PP_3271	0.17	-1.6
3,706,301	+		PP_3271	0.21	-2.4
3,706,347	-		PP_3271	0.25	-0.4
3,706,347	-		PP_3271	0.25	+0.7
3,706,604	+		PP_3271	0.45	-2.0
3,706,604	+		PP_3271	0.45	+1.9
3,706,605	-		PP_3271	0.45	-2.0
3,706,605	-		PP_3271	0.45	+0.2
3,706,625	+		PP_3271	0.47	+0.3
3,706,626	-		PP_3271	0.47	+0.2
3,706,626	-		PP_3271	0.47	+1.2
3,706,628	+		PP_3271	0.47	+0.4
3,706,629	-		PP_3271	0.47	+0.2
3,706,629	-		PP_3271	0.47	-1.3
3,706,631	+		PP_3271	0.47	-2.4
3,706,632	-		PP_3271	0.47	-1.8
3,706,661	+		PP_3271	0.50	-1.4
3,706,844	+		PP_3271	0.64	+1.3
3,706,844	+		PP_3271	0.64	-1.7
3,706,906	+		PP_3271	0.69	-1.8
3,706,906	+		PP_3271	0.69	+0.2
3,706,906	+		PP_3271	0.69	-1.8
3,706,906	+		PP_3271	0.69	-3.5
3,706,907	-		PP_3271	0.69	+0.9
3,706,907	-		PP_3271	0.69	-2.9
3,706,934	+		PP_3271	0.71	-1.8
3,706,934	+		PP_3271	0.71	-1.0
3,706,935	-		PP_3271	0.71	-0.4