Strain Fitness in Pseudomonas putida KT2440 around PP_3268

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,701,190	+		PP_3266	0.71	+0.3
3,701,335	+		PP_3266	0.85	+1.0
3,701,336	-		PP_3266	0.85	-1.3
3,701,627	+				+1.0
3,701,627	+				+0.4
3,701,628	-				-1.7
3,701,628	-				-1.8
3,701,628	-				-1.5
3,701,773	-		PP_3267	0.34	-0.3
3,701,773	-		PP_3267	0.34	-2.0
3,701,807	+		PP_3267	0.40	-2.7
3,701,843	+		PP_3267	0.46	-0.7
3,701,974	-		PP_3267	0.68	+0.1
3,701,989	-		PP_3267	0.70	-3.0
3,701,989	-		PP_3267	0.70	-2.2
3,702,040	+		PP_3267	0.79	-0.6
3,702,041	-		PP_3267	0.79	-1.7
3,702,052	+		PP_3267	0.81	-2.9
3,702,052	+		PP_3267	0.81	+0.2
3,702,053	-		PP_3267	0.81	-2.8
3,702,053	-		PP_3267	0.81	-0.9
3,702,053	-		PP_3267	0.81	+0.3
3,702,053	-		PP_3267	0.81	-0.6
3,702,166	-				+0.9
3,702,338	+		PP_3268	0.42	-1.9
3,702,338	+		PP_3268	0.42	-2.9
3,702,339	-		PP_3268	0.43	-1.7
3,702,339	-		PP_3268	0.43	-1.9
3,702,394	+		PP_3268	0.56	+0.4
3,702,435	+		PP_3268	0.67	+0.8
3,702,435	+		PP_3268	0.67	-1.0
3,702,435	+		PP_3268	0.67	-2.1
3,702,435	+		PP_3268	0.67	-2.8
3,702,435	+		PP_3268	0.67	-2.7
3,702,435	+		PP_3268	0.67	-1.0
3,702,435	+		PP_3268	0.67	-3.9
3,702,435	+		PP_3268	0.67	-3.3
3,702,435	+		PP_3268	0.67	-2.9
3,702,436	-		PP_3268	0.67	-3.3
3,702,436	-		PP_3268	0.67	-2.1
3,702,436	-		PP_3268	0.67	+1.0
3,702,436	-		PP_3268	0.67	+0.4
3,702,436	-				+1.9
3,702,436	-		PP_3268	0.67	+1.1
3,702,436	-		PP_3268	0.67	+1.3
3,702,436	-		PP_3268	0.67	-1.1
3,702,496	+		PP_3268	0.82	-2.1
3,702,497	-		PP_3268	0.82	+0.8
3,702,621	+				-0.4
3,702,621	+				-1.4
3,702,686	+				-0.9
3,702,750	+				-2.0
3,702,750	+				-0.8
3,702,751	-				+0.7
3,702,751	-				-0.9
3,702,751	-				-2.4
3,702,863	-		PP_3269	0.42	-0.4
3,703,042	+				+0.2
3,703,042	+				-2.8
3,703,042	+				+3.6
3,703,043	-				-1.0
3,703,043	-				-1.4
3,703,043	-				-2.3
3,703,182	+				+1.9
3,703,182	+				-0.1
3,703,182	+				-0.3
3,703,195	+				-1.7
3,703,195	+				+0.6
3,703,195	+				-0.5
3,703,196	-				+1.9
3,703,196	-				-1.7
3,703,196	-				-0.7
3,703,196	-				-2.1
3,703,208	-		PP_5596	0.11	-2.0
3,703,507	-				-1.1
3,703,507	-				+0.3
3,703,520	+				-0.4
3,703,521	-				-1.8
3,703,521	-				+0.0
3,703,521	-				-2.6
3,703,521	-				+0.2