Strain Fitness in Pseudomonas putida KT2440 around PP_3255

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,688,758	+		PP_3253	0.79	-1.8
3,688,759	-		PP_3253	0.79	-2.3
3,688,821	+		PP_3253	0.85	+0.7
3,688,821	+		PP_3253	0.85	-0.2
3,688,821	+		PP_3253	0.85	+1.0
3,688,827	+				+1.9
3,688,827	+		PP_3253	0.85	+0.2
3,688,827	+		PP_3253	0.85	+0.3
3,688,885	+				-0.1
3,688,885	+				-1.3
3,689,055	+		PP_3254	0.11	+0.7
3,689,056	-		PP_3254	0.11	-1.7
3,689,056	-		PP_3254	0.11	-1.6
3,689,479	+		PP_3254	0.76	-2.6
3,689,479	+		PP_3254	0.76	+0.3
3,689,529	+		PP_3254	0.84	+1.9
3,689,529	+		PP_3254	0.84	-2.5
3,689,529	+		PP_3254	0.84	+0.1
3,689,530	-		PP_3254	0.84	-2.6
3,689,530	-		PP_3254	0.84	+0.6
3,689,530	-		PP_3254	0.84	-2.5
3,689,530	-				+1.9
3,689,533	+		PP_3254	0.84	-2.4
3,689,534	-		PP_3254	0.85	+0.1
3,689,579	+				-2.3
3,689,691	+				-1.3
3,689,899	+		PP_3255	0.22	-1.4
3,689,900	-		PP_3255	0.22	-0.7
3,689,933	+		PP_3255	0.26	-0.3
3,689,933	+		PP_3255	0.26	-0.6
3,689,934	-		PP_3255	0.26	-2.9
3,689,934	-		PP_3255	0.26	-1.0
3,690,051	-		PP_3255	0.40	-2.6
3,690,051	-		PP_3255	0.40	+1.9
3,690,054	-		PP_3255	0.41	-1.2
3,690,086	+		PP_3255	0.45	-0.6
3,690,086	+		PP_3255	0.45	+0.1
3,690,087	-				+1.1
3,690,087	-		PP_3255	0.45	+0.1
3,690,087	-		PP_3255	0.45	-0.3
3,690,144	+		PP_3255	0.52	-1.3
3,690,144	+		PP_3255	0.52	+0.2
3,690,145	-		PP_3255	0.52	+0.2
3,690,145	-		PP_3255	0.52	-1.1
3,690,145	-		PP_3255	0.52	+0.7
3,690,316	-		PP_3255	0.73	-0.2
3,690,316	-		PP_3255	0.73	-0.4
3,690,350	+		PP_3255	0.77	-2.9
3,690,350	+		PP_3255	0.77	-1.9
3,690,350	+		PP_3255	0.77	+0.4
3,690,351	-		PP_3255	0.77	+0.9
3,690,647	-		PP_3256	0.13	-2.1
3,690,647	-		PP_3256	0.13	-0.1
3,690,686	+		PP_3256	0.19	-1.2
3,690,687	-		PP_3256	0.19	-1.1
3,690,750	+		PP_3256	0.28	-0.9
3,690,750	+		PP_3256	0.28	-1.9
3,690,750	+		PP_3256	0.28	-0.3
3,690,751	-		PP_3256	0.28	+0.8
3,690,825	+		PP_3256	0.40	-1.3
3,690,902	-		PP_3256	0.51	+1.1
3,691,050	-		PP_3256	0.74	-3.3
3,691,100	+		PP_3256	0.81	+0.4
3,691,196	-				-0.8
3,691,269	-				-1.7
3,691,269	-				-1.0
3,691,334	-		PP_3257	0.19	-2.4
3,691,413	-		PP_3257	0.32	+0.1
3,691,469	+		PP_3257	0.42	-2.4
3,691,469	+		PP_3257	0.42	+1.4
3,691,469	+		PP_3257	0.42	-0.1
3,691,470	-		PP_3257	0.42	-1.7
3,691,470	-		PP_3257	0.42	-1.8
3,691,470	-		PP_3257	0.42	-0.0
3,691,470	-		PP_3257	0.42	-1.1
3,691,470	-		PP_3257	0.42	-1.7
3,691,470	-		PP_3257	0.42	-2.1
3,691,472	+		PP_3257	0.42	-2.3
3,691,473	-		PP_3257	0.42	+0.7
3,691,473	-		PP_3257	0.42	-1.4