Strain Fitness in Pseudomonas putida KT2440 around PP_3254

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,688,008	-		PP_3253	0.11	+1.2
3,688,070	+		PP_3253	0.17	-3.0
3,688,145	+		PP_3253	0.24	-1.9
3,688,145	+		PP_3253	0.24	+1.4
3,688,208	+		PP_3253	0.29	-0.3
3,688,208	+		PP_3253	0.29	+0.9
3,688,209	-		PP_3253	0.29	-2.3
3,688,209	-		PP_3253	0.29	-1.1
3,688,209	-		PP_3253	0.29	-0.7
3,688,210	+		PP_3253	0.29	+0.1
3,688,210	+		PP_3253	0.29	+1.9
3,688,211	-		PP_3253	0.30	+1.1
3,688,211	-		PP_3253	0.30	+0.2
3,688,250	-		PP_3253	0.33	-0.4
3,688,250	-		PP_3253	0.33	-2.0
3,688,344	+		PP_3253	0.42	-0.9
3,688,387	+		PP_3253	0.45	+2.5
3,688,388	-		PP_3253	0.46	-2.5
3,688,472	+		PP_3253	0.53	+0.9
3,688,718	+		PP_3253	0.75	+0.7
3,688,718	+		PP_3253	0.75	+1.3
3,688,718	+		PP_3253	0.75	-0.3
3,688,719	-		PP_3253	0.75	-0.7
3,688,758	+		PP_3253	0.79	-1.8
3,688,759	-		PP_3253	0.79	-2.3
3,688,821	+		PP_3253	0.85	+0.7
3,688,821	+		PP_3253	0.85	-0.2
3,688,821	+		PP_3253	0.85	+1.0
3,688,827	+				+1.9
3,688,827	+		PP_3253	0.85	+0.2
3,688,827	+		PP_3253	0.85	+0.3
3,688,885	+				-0.1
3,688,885	+				-1.3
3,689,055	+		PP_3254	0.11	+0.7
3,689,056	-		PP_3254	0.11	-1.7
3,689,056	-		PP_3254	0.11	-1.6
3,689,479	+		PP_3254	0.76	-2.6
3,689,479	+		PP_3254	0.76	+0.3
3,689,529	+		PP_3254	0.84	+1.9
3,689,529	+		PP_3254	0.84	-2.5
3,689,529	+		PP_3254	0.84	+0.1
3,689,530	-		PP_3254	0.84	-2.6
3,689,530	-		PP_3254	0.84	+0.6
3,689,530	-		PP_3254	0.84	-2.5
3,689,530	-				+1.9
3,689,533	+		PP_3254	0.84	-2.4
3,689,534	-		PP_3254	0.85	+0.1
3,689,579	+				-2.3
3,689,691	+				-1.3
3,689,899	+		PP_3255	0.22	-1.4
3,689,900	-		PP_3255	0.22	-0.7
3,689,933	+		PP_3255	0.26	-0.3
3,689,933	+		PP_3255	0.26	-0.6
3,689,934	-		PP_3255	0.26	-2.9
3,689,934	-		PP_3255	0.26	-1.0
3,690,051	-		PP_3255	0.40	-2.6
3,690,051	-		PP_3255	0.40	+1.9
3,690,054	-		PP_3255	0.41	-1.2
3,690,086	+		PP_3255	0.45	-0.6
3,690,086	+		PP_3255	0.45	+0.1
3,690,087	-				+1.1
3,690,087	-		PP_3255	0.45	+0.1
3,690,087	-		PP_3255	0.45	-0.3
3,690,144	+		PP_3255	0.52	-1.3
3,690,144	+		PP_3255	0.52	+0.2
3,690,145	-		PP_3255	0.52	+0.2
3,690,145	-		PP_3255	0.52	-1.1
3,690,145	-		PP_3255	0.52	+0.7
3,690,316	-		PP_3255	0.73	-0.2
3,690,316	-		PP_3255	0.73	-0.4
3,690,350	+		PP_3255	0.77	-2.9
3,690,350	+		PP_3255	0.77	-1.9
3,690,350	+		PP_3255	0.77	+0.4
3,690,351	-		PP_3255	0.77	+0.9