Strain Fitness in Pseudomonas putida KT2440 around PP_3229

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,664,215	+		PP_3228	0.11	-2.7
3,664,264	+				+2.9
3,664,423	+		PP_3228	0.32	+1.2
3,664,789	+		PP_3228	0.70	-2.0
3,664,790	-		PP_3228	0.70	+0.8
3,664,839	+		PP_3228	0.75	+1.2
3,664,844	-		PP_3228	0.76	+0.2
3,664,975	+		PP_3228	0.89	+1.0
3,664,976	-		PP_3228	0.90	-0.1
3,664,976	-		PP_3228	0.90	-1.4
3,665,089	-				-2.2
3,665,089	-				-1.4
3,665,089	-				+2.5
3,665,102	-				-0.8
3,665,399	+		PP_3229	0.32	-3.5
3,665,525	+		PP_3229	0.45	+0.7
3,665,525	+		PP_3229	0.45	+2.3
3,665,526	-		PP_3229	0.45	-3.0
3,665,526	-		PP_3229	0.45	-1.4
3,665,526	-		PP_3229	0.45	+0.5
3,665,526	-		PP_3229	0.45	-2.4
3,665,526	-		PP_3229	0.45	+1.1
3,665,585	+		PP_3229	0.51	+1.1
3,665,585	+		PP_3229	0.51	+1.5
3,665,657	+		PP_3229	0.59	+1.2
3,665,657	+		PP_3229	0.59	+0.4
3,665,658	-		PP_3229	0.59	+0.5
3,665,658	-		PP_3229	0.59	-1.4
3,665,723	+		PP_3229	0.66	+0.3
3,665,724	-		PP_3229	0.66	+0.8
3,665,732	+		PP_3229	0.67	-1.1
3,665,732	+		PP_3229	0.67	+0.2
3,665,732	+		PP_3229	0.67	+0.8
3,665,735	+		PP_3229	0.67	-0.9
3,665,736	-		PP_3229	0.67	+0.7
3,665,754	-		PP_3229	0.69	+2.1
3,665,754	-		PP_3229	0.69	+0.7
3,665,775	+		PP_3229	0.71	+0.0
3,665,775	+		PP_3229	0.71	+0.2
3,665,776	-		PP_3229	0.71	-2.6
3,665,776	-		PP_3229	0.71	+0.2
3,665,776	-		PP_3229	0.71	+0.7
3,665,790	-		PP_3229	0.73	+0.3
3,665,790	-		PP_3229	0.73	+0.9
3,665,870	-		PP_3229	0.81	-0.9
3,665,915	+		PP_3229	0.86	-0.1
3,665,916	-		PP_3229	0.86	-2.1
3,665,916	-		PP_3229	0.86	-1.0
3,665,978	+				-2.7
3,666,029	+				+2.1
3,666,030	-				-1.4
3,666,030	-				+2.1
3,666,040	+				-1.4
3,666,040	+				+0.6
3,666,041	-				-0.4
3,666,048	-				-0.3
3,666,048	-				-3.5
3,666,050	+				-3.1
3,666,050	+				-0.5
3,666,051	-				+0.6
3,666,051	-				+1.6
3,666,407	-				-1.6
3,666,506	+		PP_3230	0.20	-0.4
3,666,507	-		PP_3230	0.20	+0.3
3,666,507	-		PP_3230	0.20	-1.8
3,666,556	+		PP_3230	0.28	-2.8
3,666,556	+		PP_3230	0.28	-0.4
3,666,556	+		PP_3230	0.28	-2.3
3,666,640	-		PP_3230	0.40	-1.7
3,666,654	+		PP_3230	0.42	+1.7
3,666,896	+		PP_3230	0.77	+0.1
3,666,896	+		PP_3230	0.77	+0.0
3,666,896	+		PP_3230	0.77	+1.5
3,666,957	-		PP_3230	0.85	-2.8