Strain Fitness in Pseudomonas putida KT2440 around PP_3210

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,642,272	+				+1.9
3,642,274	+		PP_3209	0.35	-0.8
3,642,275	-		PP_3209	0.35	+1.4
3,642,624	+		PP_3209	0.59	-2.4
3,642,624	+		PP_3209	0.59	-1.8
3,642,625	-		PP_3209	0.59	-0.5
3,642,633	-		PP_3209	0.60	-3.1
3,642,707	+		PP_3209	0.65	+0.3
3,642,707	+		PP_3209	0.65	-1.3
3,642,707	+		PP_3209	0.65	-0.3
3,642,808	-		PP_3209	0.72	+0.1
3,642,808	-		PP_3209	0.72	-1.7
3,642,808	-		PP_3209	0.72	+2.3
3,642,813	+		PP_3209	0.73	+0.6
3,642,814	-		PP_3209	0.73	-1.2
3,642,814	-		PP_3209	0.73	-1.7
3,642,814	-		PP_3209	0.73	-0.6
3,642,918	+		PP_3209	0.80	-0.0
3,642,919	-		PP_3209	0.80	-1.6
3,643,023	+		PP_3209	0.87	+0.3
3,643,023	+		PP_3209	0.87	-2.8
3,643,093	+				+0.8
3,643,737	-		PP_3210	0.61	-0.5
3,643,985	-				+0.3
3,644,002	+				+2.3
3,644,003	-				-1.1
3,644,003	-				+0.0
3,644,005	+				-0.4
3,644,021	-				+2.3
3,644,021	-				-0.8
3,644,171	+		PP_3211	0.13	-0.2
3,644,171	+		PP_3211	0.13	-0.8
3,644,261	+		PP_3211	0.24	+0.3
3,644,803	-		PP_3211	0.88	+0.9
3,644,889	-				+1.7
3,644,905	+				+0.3
3,644,905	+				-2.8
3,644,938	+				+0.1
3,644,938	+				-2.6
3,644,939	-				+0.7
3,645,022	+				-0.3
3,645,023	-				+0.2
3,645,023	-				+1.3
3,645,023	-				-2.3