Strain Fitness in Pseudomonas putida KT2440 around PP_3209

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,640,922	-				-2.0
3,640,922	-				+0.9
3,640,980	-		PP_3208	0.16	-1.4
3,641,002	-		PP_3208	0.18	+1.4
3,641,079	+		PP_3208	0.26	-1.3
3,641,221	+		PP_3208	0.41	-1.7
3,641,221	+		PP_3208	0.41	-1.3
3,641,221	+		PP_3208	0.41	-0.1
3,641,222	-		PP_3208	0.41	-0.3
3,641,404	+		PP_3208	0.60	+0.8
3,641,404	+		PP_3208	0.60	-0.2
3,641,405	-		PP_3208	0.61	-1.3
3,641,431	-		PP_3208	0.63	-2.1
3,641,477	+		PP_3208	0.68	+0.9
3,641,585	-		PP_3208	0.80	+0.3
3,641,586	+		PP_3208	0.80	-2.1
3,641,586	+		PP_3208	0.80	+0.5
3,641,586	+		PP_3208	0.80	-2.9
3,641,586	+		PP_3208	0.80	-2.1
3,641,586	+		PP_3208	0.80	-2.1
3,641,586	+		PP_3208	0.80	-1.8
3,641,586	+				+0.3
3,641,586	+		PP_3208	0.80	-0.2
3,641,587	-		PP_3208	0.80	-1.4
3,641,587	-		PP_3208	0.80	-1.1
3,641,587	-		PP_3208	0.80	+1.9
3,641,587	-		PP_3208	0.80	-1.3
3,641,620	+		PP_3208	0.83	+0.9
3,641,811	-				+2.1
3,641,811	-				-3.0
3,641,811	-				-0.9
3,642,272	+				+1.9
3,642,274	+		PP_3209	0.35	-0.8
3,642,275	-		PP_3209	0.35	+1.4
3,642,624	+		PP_3209	0.59	-2.4
3,642,624	+		PP_3209	0.59	-1.8
3,642,625	-		PP_3209	0.59	-0.5
3,642,633	-		PP_3209	0.60	-3.1
3,642,707	+		PP_3209	0.65	+0.3
3,642,707	+		PP_3209	0.65	-1.3
3,642,707	+		PP_3209	0.65	-0.3
3,642,808	-		PP_3209	0.72	+0.1
3,642,808	-		PP_3209	0.72	-1.7
3,642,808	-		PP_3209	0.72	+2.3
3,642,813	+		PP_3209	0.73	+0.6
3,642,814	-		PP_3209	0.73	-1.2
3,642,814	-		PP_3209	0.73	-1.7
3,642,814	-		PP_3209	0.73	-0.6
3,642,918	+		PP_3209	0.80	-0.0
3,642,919	-		PP_3209	0.80	-1.6
3,643,023	+		PP_3209	0.87	+0.3
3,643,023	+		PP_3209	0.87	-2.8
3,643,093	+				+0.8
3,643,737	-		PP_3210	0.61	-0.5
3,643,985	-				+0.3
3,644,002	+				+2.3
3,644,003	-				-1.1
3,644,003	-				+0.0
3,644,005	+				-0.4
3,644,021	-				+2.3
3,644,021	-				-0.8
3,644,171	+		PP_3211	0.13	-0.2
3,644,171	+		PP_3211	0.13	-0.8