Strain Fitness in Pseudomonas putida KT2440 around PP_3206

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,638,161	+		PP_3205	0.16	-0.4
3,638,345	-		PP_3205	0.34	+0.4
3,638,345	-		PP_3205	0.34	-2.1
3,638,387	+		PP_3205	0.38	-0.1
3,638,388	-		PP_3205	0.39	+0.8
3,638,781	-		PP_3205	0.78	-0.5
3,639,188	-		PP_3206	0.20	-0.4
3,639,252	+		PP_3206	0.27	-0.9
3,639,264	+		PP_3206	0.28	+2.1
3,639,340	-		PP_3206	0.36	-0.3
3,639,360	+		PP_3206	0.38	+1.1
3,639,420	+		PP_3206	0.44	+3.3
3,639,421	-		PP_3206	0.44	-0.1
3,639,577	-		PP_3206	0.60	-0.4
3,639,577	-		PP_3206	0.60	-2.9
3,639,577	-		PP_3206	0.60	-0.9
3,639,848	+		PP_3206	0.87	+0.9
3,639,849	-		PP_3206	0.87	-2.6
3,639,908	+				-2.0
3,639,970	+				-1.3
3,640,028	+				+1.9
3,640,064	+		PP_3207	0.12	+1.4
3,640,064	+		PP_3207	0.12	-2.4
3,640,065	-		PP_3207	0.12	+1.3
3,640,065	-		PP_3207	0.12	-2.6
3,640,066	+		PP_3207	0.12	+0.3
3,640,066	+		PP_3207	0.12	+1.4
3,640,066	+		PP_3207	0.12	-0.6
3,640,067	-		PP_3207	0.12	-1.1
3,640,067	-		PP_3207	0.12	+0.7
3,640,067	-		PP_3207	0.12	+1.0
3,640,211	+		PP_3207	0.31	+0.1
3,640,212	-		PP_3207	0.31	-0.1
3,640,439	+		PP_3207	0.60	-1.9
3,640,481	+		PP_3207	0.65	-0.7
3,640,482	-		PP_3207	0.65	-1.3
3,640,684	-				+1.8
3,640,697	+				-0.6
3,640,697	+				+0.8
3,640,698	-				-2.7
3,640,922	-				-2.0
3,640,922	-				+0.9