Strain Fitness in Pseudomonas putida KT2440 around PP_3177

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,600,290	+		PP_3176	0.32	-2.7
3,600,291	-		PP_3176	0.32	-2.6
3,600,307	-				+2.8
3,600,387	+		PP_3176	0.39	+0.1
3,600,588	-		PP_3176	0.54	-2.7
3,600,783	+		PP_3176	0.69	+1.8
3,600,784	-		PP_3176	0.69	+0.6
3,600,843	+		PP_3176	0.74	+0.1
3,600,844	-		PP_3176	0.74	+1.0
3,600,971	+		PP_3176	0.83	-0.4
3,600,971	+		PP_3176	0.83	+1.0
3,600,972	-		PP_3176	0.83	+1.1
3,600,972	-		PP_3176	0.83	+0.2
3,600,972	-		PP_3176	0.83	-0.5
3,600,975	+		PP_3176	0.84	-2.5
3,600,975	+		PP_3176	0.84	+0.0
3,600,975	+		PP_3176	0.84	-0.7
3,600,976	-		PP_3176	0.84	+2.5
3,601,080	+				+0.4
3,601,092	+				+0.5
3,601,137	+				-1.8
3,601,211	+				+1.4
3,601,343	-				+0.9
3,601,343	-				-1.2
3,601,343	-				-1.1
3,601,659	+		PP_3177	0.32	+0.4
3,601,659	+		PP_3177	0.32	-0.8
3,601,660	-		PP_3177	0.32	+0.7
3,601,660	-		PP_3177	0.32	-2.6
3,601,712	-		PP_3177	0.37	-1.9
3,601,782	-		PP_3177	0.43	+0.4
3,601,834	+				+1.8
3,601,844	-		PP_3177	0.48	-1.2
3,602,048	+		PP_3177	0.65	-1.2
3,602,048	+		PP_3177	0.65	-2.6
3,602,048	+		PP_3177	0.65	-1.9
3,602,074	+		PP_3177	0.68	-1.7
3,602,126	-		PP_3177	0.72	-2.5
3,602,126	-		PP_3177	0.72	-2.0
3,602,264	-		PP_3177	0.84	-2.0
3,602,270	+		PP_3177	0.84	-2.7
3,602,808	+		PP_3178	0.19	-0.0
3,602,809	-		PP_3178	0.19	+0.2
3,603,324	+		PP_3178	0.64	-0.1
3,603,324	+		PP_3178	0.64	+1.0
3,603,324	+		PP_3178	0.64	+2.5
3,603,325	-		PP_3178	0.64	-2.7