Strain Fitness in Pseudomonas putida KT2440 around PP_3169

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,589,820	-		PP_3168	0.27	-1.0
3,589,820	-		PP_3168	0.27	+0.4
3,589,820	-		PP_3168	0.27	-0.5
3,589,918	-		PP_3168	0.35	+0.1
3,589,918	-		PP_3168	0.35	+0.3
3,589,939	+		PP_3168	0.37	-2.4
3,589,939	+		PP_3168	0.37	-3.1
3,589,940	-		PP_3168	0.37	-2.7
3,589,983	+		PP_3168	0.40	-2.7
3,589,983	+		PP_3168	0.40	+0.2
3,589,984	-		PP_3168	0.40	+0.9
3,590,099	-		PP_3168	0.49	-1.7
3,590,114	-		PP_3168	0.51	-0.6
3,590,153	-		PP_3168	0.54	+0.0
3,590,173	+		PP_3168	0.55	+0.0
3,590,173	+		PP_3168	0.55	-1.4
3,590,173	+		PP_3168	0.55	+1.5
3,590,173	+		PP_3168	0.55	+0.2
3,590,173	+		PP_3168	0.55	-2.7
3,590,173	+		PP_3168	0.55	-1.5
3,590,174	-		PP_3168	0.55	+1.3
3,590,174	-		PP_3168	0.55	-0.7
3,590,174	-		PP_3168	0.55	-1.2
3,590,226	-		PP_3168	0.60	+1.1
3,590,246	-		PP_3168	0.61	-1.5
3,590,246	-		PP_3168	0.61	-3.7
3,590,246	-		PP_3168	0.61	-0.0
3,590,365	+		PP_3168	0.71	+0.7
3,590,365	+		PP_3168	0.71	+0.4
3,590,365	+		PP_3168	0.71	-0.5
3,590,432	-		PP_3168	0.76	+1.0
3,590,443	+		PP_3168	0.77	-0.1
3,590,473	+		PP_3168	0.79	+1.0
3,590,479	+		PP_3168	0.80	-0.3
3,590,479	+		PP_3168	0.80	+0.0
3,590,527	+		PP_3168	0.84	-2.3
3,590,527	+		PP_3168	0.84	+0.6
3,590,528	-		PP_3168	0.84	+0.4
3,590,528	-		PP_3168	0.84	-0.4
3,590,532	-		PP_3168	0.84	+1.3
3,590,602	+		PP_3168	0.90	-0.5
3,590,639	+				-0.2
3,590,671	+				+0.8
3,590,711	-				-1.8
3,590,761	+				-0.7
3,590,762	-				+1.3
3,590,828	-				-2.8
3,590,889	+				-1.9
3,590,890	-				+1.3
3,590,890	-				-0.7
3,590,938	-		PP_3169	0.12	-0.5
3,590,964	+		PP_3169	0.15	-0.5
3,590,964	+		PP_3169	0.15	-1.9
3,590,964	+		PP_3169	0.15	+0.8
3,590,965	-		PP_3169	0.15	-2.3
3,590,965	-		PP_3169	0.15	-2.2
3,591,060	-		PP_3169	0.24	-2.1
3,591,060	-		PP_3169	0.24	+1.0
3,591,060	-		PP_3169	0.24	+1.4
3,591,060	-		PP_3169	0.24	-1.7
3,591,094	+		PP_3169	0.27	-1.0
3,591,132	+		PP_3169	0.30	-1.2
3,591,302	+		PP_3169	0.46	-1.4
3,591,303	-		PP_3169	0.46	-0.8
3,591,309	+		PP_3169	0.47	+0.0
3,591,465	+		PP_3169	0.61	-0.5
3,591,466	-		PP_3169	0.61	+0.2
3,591,468	+		PP_3169	0.61	+0.4
3,591,469	-		PP_3169	0.61	-2.9
3,591,607	-		PP_3169	0.74	-2.2
3,591,666	+		PP_3169	0.80	+1.7
3,591,667	-		PP_3169	0.80	-2.2
3,591,667	-		PP_3169	0.80	+1.2
3,591,667	-		PP_3169	0.80	-2.5
3,591,667	-		PP_3169	0.80	-2.2
3,591,785	+				-1.4
3,591,785	+				+0.8
3,591,785	+				+0.2
3,591,786	-				-3.0
3,591,786	-				-0.2
3,591,786	-				+1.2
3,591,883	-				-1.4
3,591,921	+				-0.2
3,591,922	-				-3.8
3,591,922	-				+0.0
3,592,114	+		PP_3170	0.18	-1.4
3,592,492	-		PP_3170	0.59	+0.9
3,592,682	-		PP_3170	0.80	+1.2
3,592,682	-		PP_3170	0.80	+0.1
3,592,685	+		PP_3170	0.80	-3.2
3,592,685	+		PP_3170	0.80	+1.2
3,592,685	+		PP_3170	0.80	-2.3
3,592,685	+		PP_3170	0.80	+0.3
3,592,686	-		PP_3170	0.80	+1.9
3,592,686	-		PP_3170	0.80	-0.2
3,592,686	-		PP_3170	0.80	+1.7
3,592,686	-				+1.8
3,592,686	-		PP_3170	0.80	+1.4
3,592,686	-		PP_3170	0.80	-0.5
3,592,686	-		PP_3170	0.80	+0.9
3,592,686	-		PP_3170	0.80	+0.3
3,592,688	-		PP_3170	0.81	-0.3
3,592,729	-		PP_3170	0.85	-2.1