Strain Fitness in Pseudomonas putida KT2440 around PP_3109

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,516,899	-				+0.3
3,516,949	+				+1.0
3,516,950	-				+0.3
3,516,979	-				+0.7
3,517,031	-				-2.1
3,517,111	+				-2.3
3,517,126	+				-0.7
3,517,309	-		PP_5578	0.40	+0.9
3,517,593	+				+1.7
3,517,605	-				+2.1
3,517,678	+				+1.4
3,517,678	+				+0.9
3,517,678	+				-0.1
3,517,678	+				-1.3
3,517,679	-				-1.3
3,517,679	-				+2.7
3,517,706	+				-0.0
3,517,706	+				-0.7
3,517,707	-				-0.2
3,517,929	+		PP_3109	0.10	+0.1
3,517,930	-				+1.7
3,517,930	-		PP_3109	0.11	+0.7
3,517,930	-		PP_3109	0.11	+0.2
3,517,932	+		PP_3109	0.11	+1.5
3,517,932	+		PP_3109	0.11	+0.1
3,517,932	+		PP_3109	0.11	+1.9
3,517,932	+		PP_3109	0.11	-1.2
3,517,932	+		PP_3109	0.11	+2.2
3,517,932	+		PP_3109	0.11	-2.5
3,517,932	+		PP_3109	0.11	+0.7
3,517,932	+		PP_3109	0.11	+2.7
3,517,932	+		PP_3109	0.11	+0.7
3,517,933	-		PP_3109	0.11	+1.7
3,517,933	-		PP_3109	0.11	-2.0
3,517,933	-		PP_3109	0.11	+1.7
3,518,015	+		PP_3109	0.30	-3.0
3,518,015	+		PP_3109	0.30	-2.3
3,518,015	+		PP_3109	0.30	+1.2
3,518,016	-		PP_3109	0.31	-2.9
3,518,016	-		PP_3109	0.31	+0.0
3,518,033	-		PP_3109	0.34	-2.2
3,518,033	-		PP_3109	0.34	+1.0
3,518,036	+		PP_3109	0.35	+0.8
3,518,036	+		PP_3109	0.35	+3.9
3,518,036	+		PP_3109	0.35	+1.3
3,518,037	-		PP_3109	0.35	-2.2
3,518,037	-		PP_3109	0.35	+1.1
3,518,037	-		PP_3109	0.35	-0.0
3,518,037	-		PP_3109	0.35	+0.1
3,518,037	-		PP_3109	0.35	+1.4
3,518,037	-		PP_3109	0.35	-2.7
3,518,088	+		PP_3109	0.47	-2.5
3,518,088	+		PP_3109	0.47	+0.9
3,518,088	+		PP_3109	0.47	+0.4
3,518,089	-		PP_3109	0.47	+0.8
3,518,091	+		PP_3109	0.48	-2.7
3,518,114	+		PP_3109	0.53	+1.0
3,518,280	-				+1.7
3,518,463	+		PP_5579	0.19	-2.9
3,518,469	+		PP_5579	0.20	+0.3
3,518,616	+		PP_5579	0.50	+1.6
3,518,671	-		PP_5579	0.62	+1.2
3,518,740	+		PP_5579	0.76	+0.7
3,518,741	-		PP_5579	0.76	-1.1
3,518,758	+		PP_5579	0.80	+0.4
3,518,795	+		PP_5579	0.88	-1.7
3,518,797	+		PP_5579	0.88	-0.8
3,518,798	-		PP_5579	0.88	+0.7
3,518,851	+				+1.6
3,518,990	-				+0.5
3,519,009	-				-2.1
3,519,107	+				+0.1
3,519,119	-				+0.9
3,519,119	-				+0.7
3,519,146	-				-0.2
3,519,206	+		PP_5580	0.23	-2.3