Strain Fitness in Pseudomonas putida KT2440 around PP_3103

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,503,586	+				+1.7
3,503,608	-				+0.3
3,503,701	+				+0.1
3,503,762	-				-2.2
3,503,803	-				+1.0
3,503,980	+				-2.3
3,504,010	+				-1.8
3,504,090	+		PP_5573	0.46	+0.4
3,504,207	+				-1.7
3,504,208	-				-0.2
3,504,208	-				+0.7
3,504,214	+				+2.3
3,504,215	-				+1.2
3,504,216	+				-0.2
3,504,217	-				+2.7
3,504,217	-				-0.3
3,504,320	+		PP_3102	0.15	+1.7
3,504,321	-		PP_3102	0.15	+1.2
3,504,325	-		PP_3102	0.17	+2.0
3,504,422	-		PP_3102	0.49	+0.7
3,504,456	+		PP_3102	0.61	+2.5
3,504,470	+		PP_3102	0.66	+0.9
3,504,473	+		PP_3102	0.67	-2.7
3,504,484	-		PP_3102	0.70	+1.7
3,504,493	-		PP_3102	0.73	-2.3
3,504,542	+				+0.9
3,504,542	+				+0.0
3,504,542	+				+0.7
3,504,542	+				-0.5
3,504,543	-				-0.3
3,504,543	-				-0.3
3,504,543	-				+0.6
3,504,571	+				-2.0
3,504,571	+				+0.7
3,504,571	+				-1.2
3,504,587	-				-3.1
3,504,647	+				-0.9
3,504,647	+				-0.3
3,504,648	-				+0.2
3,504,694	-		PP_3103	0.12	-0.2
3,504,694	-		PP_3103	0.12	+0.7
3,504,729	-		PP_3103	0.15	+1.5
3,504,828	-		PP_3103	0.24	+1.3
3,504,932	+		PP_3103	0.34	+0.7
3,504,933	-		PP_3103	0.34	+1.4
3,504,933	-		PP_3103	0.34	+0.7
3,504,941	+		PP_3103	0.35	+0.7
3,504,941	+		PP_3103	0.35	-1.5
3,504,954	+		PP_3103	0.36	-2.4
3,504,955	-		PP_3103	0.36	+2.4
3,504,956	+		PP_3103	0.36	-0.2
3,504,957	-		PP_3103	0.36	+1.4
3,504,957	-		PP_3103	0.36	+1.0
3,504,979	+		PP_3103	0.38	+0.3
3,505,003	+		PP_3103	0.41	+0.7
3,505,003	+		PP_3103	0.41	+2.7
3,505,003	+		PP_3103	0.41	+1.6
3,505,004	-		PP_3103	0.41	-1.3
3,505,004	-		PP_3103	0.41	-2.3
3,505,332	+		PP_3103	0.71	-2.0
3,505,333	-		PP_3103	0.71	-1.5
3,505,337	+		PP_3103	0.72	-2.6
3,505,337	+		PP_3103	0.72	-0.4
3,505,337	+		PP_3103	0.72	-1.9
3,505,338	-		PP_3103	0.72	+2.8
3,505,338	-		PP_3103	0.72	+3.2
3,505,338	-		PP_3103	0.72	+0.4
3,505,357	+		PP_3103	0.73	-1.2
3,505,542	-				+1.7
3,505,642	+				+0.4
3,505,643	-				+0.2
3,505,689	-				-0.7
3,505,707	+				+0.2
3,505,767	-				+1.3
3,505,770	+				-0.3
3,505,770	+				-1.2
3,505,770	+				-1.9
3,505,771	-				+0.1
3,505,771	-				+0.1
3,505,771	-				+0.7
3,505,771	-				-1.0
3,505,771	-				+1.2
3,505,771	-				+1.7
3,505,862	+				+2.0
3,505,871	+				+0.8
3,505,871	+				+2.8
3,505,872	-				-0.3
3,505,932	-				+0.5
3,505,937	+				-1.3
3,505,938	-				+0.9
3,506,097	-				+1.0
3,506,194	-		PP_5574	0.32	-2.7
3,506,195	+		PP_5574	0.32	-0.7
3,506,216	+		PP_5574	0.42	+1.3
3,506,217	-		PP_5574	0.42	+0.7
3,506,285	+		PP_5574	0.72	+0.8
3,506,285	+		PP_5574	0.72	-2.3
3,506,318	-		PP_5574	0.87	+2.0
3,506,318	-		PP_5574	0.87	+0.2
3,506,335	+				+0.7
3,506,335	+				+1.8
3,506,335	+				+0.5
3,506,336	-				+1.3
3,506,339	+				-3.2
3,506,340	-				+1.6
3,506,376	+				-2.5
3,506,436	-				-0.5
3,506,436	-				-0.9
3,506,494	+				-1.3
3,506,533	+				+2.7
3,506,533	+				+0.1
3,506,568	+				-1.5
3,506,569	-				-3.0