Strain Fitness in Pseudomonas putida KT2440 around PP_3099

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,493,804	+		PP_3097	0.78	-3.2
3,493,965	-		PP_3097	0.87	-0.6
3,493,969	+		PP_3097	0.87	-1.4
3,493,970	-		PP_3097	0.87	-0.2
3,493,970	-		PP_3097	0.87	+0.1
3,493,970	-		PP_3097	0.87	-2.5
3,494,181	-				-3.5
3,494,224	+				+0.4
3,494,225	-				-0.1
3,494,225	-				-1.4
3,494,575	+		PP_3098	0.77	-0.2
3,494,679	-				-2.4
3,494,698	-				+0.2
3,494,698	-				+0.2
3,494,779	-				-1.5
3,494,779	-				-0.4
3,494,793	+				-2.6
3,494,793	+				-0.4
3,494,809	-				+0.2
3,494,910	+		PP_3099	0.13	-0.4
3,494,910	+		PP_3099	0.13	-3.2
3,494,911	-		PP_3099	0.13	-0.7
3,494,997	+		PP_3099	0.19	+0.2
3,494,997	+		PP_3099	0.19	+0.1
3,494,997	+		PP_3099	0.19	+1.4
3,495,027	+		PP_3099	0.21	-1.8
3,495,027	+		PP_3099	0.21	-1.1
3,495,027	+		PP_3099	0.21	-1.9
3,495,027	+		PP_3099	0.21	-0.4
3,495,028	-		PP_3099	0.21	-2.9
3,495,028	-		PP_3099	0.21	-2.4
3,495,124	-		PP_3099	0.27	-1.4
3,495,375	+		PP_3099	0.44	-1.0
3,495,448	-		PP_3099	0.49	-1.0
3,495,531	+		PP_3099	0.55	-3.3
3,495,531	+		PP_3099	0.55	-1.9
3,495,675	+		PP_3099	0.64	-0.2
3,495,675	+		PP_3099	0.64	+0.1
3,495,675	+		PP_3099	0.64	-2.7
3,495,675	+				+1.6
3,495,676	-		PP_3099	0.64	-1.3
3,495,676	-		PP_3099	0.64	+0.5
3,495,676	-		PP_3099	0.64	-1.9
3,495,676	-				+0.1
3,495,676	-		PP_3099	0.64	-0.0
3,495,750	+		PP_3099	0.69	-1.8
3,495,762	+		PP_3099	0.70	+1.1
3,495,819	-		PP_3099	0.74	-1.8
3,496,578	-		PP_3100	0.61	+0.3
3,496,701	-		PP_3100	0.82	+0.1
3,496,707	+		PP_3100	0.83	-0.6
3,496,707	+		PP_3100	0.83	+0.9
3,496,708	-		PP_3100	0.83	+0.5
3,496,833	+				+0.9
3,497,101	-		PP_5562	0.35	-2.9
3,497,101	-		PP_5562	0.35	-0.2
3,497,101	-		PP_5562	0.35	+0.3
3,497,116	-		PP_5562	0.37	-2.7
3,497,133	+		PP_5562	0.39	-0.0