Strain Fitness in Pseudomonas putida KT2440 around PP_3097

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,491,531	+		PP_3096	0.17	-0.1
3,491,531	+		PP_3096	0.17	-0.4
3,491,531	+		PP_3096	0.17	-2.9
3,491,531	+		PP_3096	0.17	+1.5
3,491,531	+		PP_3096	0.17	-0.1
3,491,532	-		PP_3096	0.17	+1.2
3,491,532	-		PP_3096	0.17	-2.3
3,491,532	-		PP_3096	0.17	-2.9
3,491,532	-		PP_3096	0.17	-0.8
3,491,533	+		PP_3096	0.17	-1.3
3,491,533	+		PP_3096	0.17	-0.9
3,491,535	+		PP_3096	0.17	-0.0
3,491,535	+		PP_3096	0.17	-0.3
3,491,535	+		PP_3096	0.17	-0.4
3,491,535	+		PP_3096	0.17	-0.6
3,491,536	-		PP_3096	0.18	-1.7
3,491,536	-		PP_3096	0.18	-1.4
3,491,756	+		PP_3096	0.38	-0.9
3,491,757	-		PP_3096	0.38	+1.1
3,491,778	+		PP_3096	0.40	-1.8
3,491,778	+		PP_3096	0.40	-1.0
3,491,778	+		PP_3096	0.40	-0.1
3,491,779	-		PP_3096	0.40	-1.6
3,492,100	-		PP_3096	0.70	-2.1
3,492,421	+				-0.5
3,492,421	+				-2.5
3,492,421	+				+1.3
3,492,421	+				+1.5
3,492,422	-				-2.5
3,492,422	-				+0.5
3,492,683	+		PP_3097	0.17	-2.8
3,492,689	+		PP_3097	0.17	-0.1
3,492,689	+		PP_3097	0.17	+1.9
3,492,690	-		PP_3097	0.17	-2.4
3,492,934	-		PP_3097	0.30	+0.4
3,493,326	-		PP_3097	0.52	+0.3
3,493,337	+		PP_3097	0.52	-0.4
3,493,338	-		PP_3097	0.52	-2.4
3,493,476	-		PP_3097	0.60	+0.5
3,493,503	-		PP_3097	0.62	-2.2
3,493,608	-		PP_3097	0.67	-0.8
3,493,804	+		PP_3097	0.78	-3.2
3,493,965	-		PP_3097	0.87	-0.6
3,493,969	+		PP_3097	0.87	-1.4
3,493,970	-		PP_3097	0.87	-0.2
3,493,970	-		PP_3097	0.87	+0.1
3,493,970	-		PP_3097	0.87	-2.5
3,494,181	-				-3.5
3,494,224	+				+0.4
3,494,225	-				-0.1
3,494,225	-				-1.4
3,494,575	+		PP_3098	0.77	-0.2
3,494,679	-				-2.4
3,494,698	-				+0.2
3,494,698	-				+0.2
3,494,779	-				-1.5
3,494,779	-				-0.4
3,494,793	+				-2.6
3,494,793	+				-0.4
3,494,809	-				+0.2
3,494,910	+		PP_3099	0.13	-0.4
3,494,910	+		PP_3099	0.13	-3.2
3,494,911	-		PP_3099	0.13	-0.7
3,494,997	+		PP_3099	0.19	+0.2
3,494,997	+		PP_3099	0.19	+0.1
3,494,997	+		PP_3099	0.19	+1.4
3,495,027	+		PP_3099	0.21	-1.8
3,495,027	+		PP_3099	0.21	-1.1
3,495,027	+		PP_3099	0.21	-1.9
3,495,027	+		PP_3099	0.21	-0.4
3,495,028	-		PP_3099	0.21	-2.9
3,495,028	-		PP_3099	0.21	-2.4
3,495,124	-		PP_3099	0.27	-1.4