Strain Fitness in Pseudomonas putida KT2440 around PP_3090

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,477,836	-		PP_3088	0.88	-1.2
3,477,965	+				+0.1
3,477,965	+				+0.2
3,477,966	-				-1.4
3,477,966	-				+0.2
3,477,966	-				-0.8
3,477,985	+				+0.8
3,477,986	-				+1.8
3,478,062	+				+0.6
3,478,146	+		PP_3089	0.16	-2.8
3,478,146	+		PP_3089	0.16	-2.2
3,478,146	+		PP_3089	0.16	-0.4
3,478,146	+		PP_3089	0.16	+0.6
3,478,146	+		PP_3089	0.16	-1.5
3,478,146	+		PP_3089	0.16	-0.7
3,478,147	-		PP_3089	0.16	-2.6
3,478,533	-		PP_3089	0.87	+0.6
3,478,533	-		PP_3089	0.87	-1.2
3,478,561	+				-0.4
3,478,563	+				-2.6
3,478,563	+				-0.9
3,478,563	+				-2.4
3,478,563	+				-0.7
3,478,563	+				-0.5
3,478,564	-				-1.8
3,478,564	-				-3.1
3,478,564	-				-0.2
3,478,564	-				-2.1
3,478,596	-				-1.0
3,478,596	-				+1.3
3,478,605	+				-0.5
3,478,605	+				+0.7
3,478,605	+				-1.3
3,478,606	-				+0.6
3,478,606	-				+1.0
3,478,661	+				+0.3
3,478,662	-				-2.1
3,478,728	+				+1.6
3,478,729	-				-1.8
3,478,864	+				-2.5
3,478,884	-				-0.4
3,478,884	-				+1.6
3,478,980	+		PP_3090	0.10	-0.4
3,479,141	+		PP_3090	0.17	+1.1
3,479,141	+		PP_3090	0.17	-2.9
3,479,142	-		PP_3090	0.17	-0.6
3,479,216	+		PP_3090	0.20	+0.2
3,479,216	+		PP_3090	0.20	-1.1
3,479,216	+		PP_3090	0.20	+0.4
3,479,217	-		PP_3090	0.20	-2.2
3,479,217	-		PP_3090	0.20	-2.0
3,479,217	-		PP_3090	0.20	+0.6
3,479,241	-		PP_3090	0.21	-2.2
3,479,246	+		PP_3090	0.21	+0.0
3,479,246	+		PP_3090	0.21	+0.2
3,479,246	+		PP_3090	0.21	+0.8
3,479,247	-		PP_3090	0.21	+0.7
3,479,393	+		PP_3090	0.27	-2.6
3,479,394	-		PP_3090	0.27	-0.0
3,479,394	-		PP_3090	0.27	-1.3
3,479,394	-		PP_3090	0.27	+0.1
3,479,394	-		PP_3090	0.27	+0.2
3,479,394	-		PP_3090	0.27	-2.4
3,479,467	+		PP_3090	0.30	-0.2
3,479,468	-		PP_3090	0.30	-3.6
3,479,468	-		PP_3090	0.30	-1.8
3,479,559	+		PP_3090	0.33	-1.6
3,479,575	+		PP_3090	0.34	+0.4
3,479,575	+		PP_3090	0.34	+0.9
3,479,603	+		PP_3090	0.35	-2.5
3,479,643	-		PP_3090	0.37	-1.2
3,479,744	+		PP_3090	0.41	-1.0
3,479,745	-		PP_3090	0.41	+0.2
3,479,925	-		PP_3090	0.48	-2.7
3,480,244	+		PP_3090	0.61	-3.1
3,480,244	+		PP_3090	0.61	-2.5
3,480,244	+		PP_3090	0.61	-1.2
3,480,244	+		PP_3090	0.61	-1.4
3,480,244	+		PP_3090	0.61	-3.3
3,480,244	+		PP_3090	0.61	+1.6
3,480,244	+		PP_3090	0.61	+0.4
3,480,245	-		PP_3090	0.61	-0.2
3,480,245	-		PP_3090	0.61	-0.4
3,480,366	+		PP_3090	0.66	-1.7
3,480,407	+		PP_3090	0.67	-1.8
3,480,668	+		PP_3090	0.78	-0.3
3,480,839	+		PP_3090	0.85	+0.1
3,480,854	+		PP_3090	0.85	-0.1
3,480,854	+		PP_3090	0.85	-0.4
3,480,854	+		PP_3090	0.85	-2.1
3,480,854	+		PP_3090	0.85	+2.2
3,480,854	+		PP_3090	0.85	+0.5
3,480,855	-		PP_3090	0.85	+1.0
3,480,855	-		PP_3090	0.85	+0.6
3,480,855	-		PP_3090	0.85	-1.8
3,481,048	+				-3.1
3,481,048	+				-1.0
3,481,048	+				+1.5
3,481,048	+				+0.3
3,481,048	+				-3.2
3,481,048	+				-3.2
3,481,052	+				+0.5
3,481,052	+				-1.7
3,481,053	-				+0.0
3,481,053	-				-2.4
3,481,178	+				-0.0
3,481,178	+				-3.4
3,481,178	+				-1.7
3,481,179	-				+2.3
3,481,179	-				+0.8
3,481,199	+				-2.3
3,481,199	+				-1.5
3,481,199	+				-3.0
3,481,203	-				-1.4
3,481,218	+				-3.3
3,481,280	-				-2.7
3,481,396	+		PP_5561	0.20	-0.3
3,481,396	+		PP_5561	0.20	-0.1
3,481,506	-		PP_5561	0.32	-2.6
3,481,506	-		PP_5561	0.32	+0.4
3,481,841	+		PP_5561	0.69	+1.0
3,481,841	+		PP_5561	0.69	-0.4
3,481,952	-		PP_5561	0.81	-2.9