Strain Fitness in Pseudomonas putida KT2440 around PP_3085

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,471,666	+		PP_3084	0.65	-1.1
3,471,666	+		PP_3084	0.65	-2.5
3,471,667	-		PP_3084	0.65	-0.6
3,471,788	+		PP_3084	0.70	-3.4
3,471,788	+		PP_3084	0.70	+0.8
3,471,854	-		PP_3084	0.72	+1.3
3,471,854	-		PP_3084	0.72	-1.0
3,471,855	+		PP_3084	0.72	-2.2
3,471,855	+		PP_3084	0.72	+1.5
3,471,856	-		PP_3084	0.73	-2.4
3,471,856	-		PP_3084	0.73	+1.2
3,472,005	+		PP_3084	0.79	-1.4
3,472,005	+		PP_3084	0.79	+2.3
3,472,005	+		PP_3084	0.79	+0.0
3,472,005	+		PP_3084	0.79	+0.5
3,472,006	-		PP_3084	0.79	-2.2
3,472,006	-		PP_3084	0.79	+0.4
3,472,006	-		PP_3084	0.79	-1.8
3,472,006	-		PP_3084	0.79	+0.2
3,472,180	+		PP_3084	0.86	-0.0
3,472,181	-		PP_3084	0.86	+0.0
3,472,181	-		PP_3084	0.86	-3.0
3,472,183	-		PP_3084	0.86	+0.6
3,472,198	+		PP_3084	0.86	-2.6
3,472,212	+		PP_3084	0.87	+2.0
3,472,253	-		PP_3084	0.89	-0.3
3,472,253	-		PP_3084	0.89	-1.5
3,472,253	-		PP_3084	0.89	-0.9
3,472,257	+		PP_3084	0.89	+0.8
3,472,258	-		PP_3084	0.89	-0.2
3,472,258	-		PP_3084	0.89	+1.6
3,472,258	-		PP_3084	0.89	-0.9
3,472,283	+		PP_3084	0.90	-1.2
3,472,349	+				+0.0
3,472,349	+				+0.5
3,472,350	-				-0.2
3,472,350	-				+0.6
3,472,380	+				+1.4
3,472,442	+				-1.6
3,472,448	+				+1.1
3,472,449	-				-3.3
3,472,554	+				-3.0
3,472,554	+				-1.5
3,472,554	+				-2.9
3,472,661	-				-0.4
3,472,907	-		PP_3085	0.28	-0.4
3,472,907	-		PP_3085	0.28	-2.1
3,473,029	-		PP_3085	0.40	-2.1
3,473,128	+		PP_3085	0.51	-1.7
3,473,182	-		PP_3085	0.56	-3.0
3,473,203	-		PP_3085	0.58	-1.4
3,473,259	+		PP_3085	0.64	-2.2
3,473,260	-		PP_3085	0.64	-3.1
3,473,633	+				-3.1
3,473,692	+		PP_3086	0.18	-0.0
3,473,693	-		PP_3086	0.18	-1.4
3,473,693	-		PP_3086	0.18	-1.2
3,473,774	-		PP_3086	0.34	-0.4
3,473,852	-		PP_3086	0.50	-1.0
3,473,904	+		PP_3086	0.60	-1.1
3,473,904	+		PP_3086	0.60	-2.7
3,473,904	+		PP_3086	0.60	+0.1
3,473,904	+		PP_3086	0.60	+1.6
3,473,904	+		PP_3086	0.60	+0.7
3,473,904	+		PP_3086	0.60	-0.1
3,473,904	+		PP_3086	0.60	+1.1
3,473,905	-		PP_3086	0.60	+0.8
3,473,905	-		PP_3086	0.60	-0.0
3,473,906	+				+2.4
3,473,907	-		PP_3086	0.60	-1.2
3,473,907	-		PP_3086	0.60	-2.1
3,473,907	-		PP_3086	0.60	-1.5
3,473,912	+		PP_3086	0.61	+0.5
3,473,912	+		PP_3086	0.61	-0.4
3,473,912	+		PP_3086	0.61	-1.7
3,473,912	+		PP_3086	0.61	-0.8
3,473,913	-		PP_3086	0.62	-1.3
3,473,913	-		PP_3086	0.62	+1.4
3,473,941	+		PP_3086	0.67	+0.0
3,474,061	+				-0.7
3,474,061	+				-2.0
3,474,062	-				-1.0
3,474,197	+				+2.0
3,474,198	-				+2.4
3,474,237	+				+1.6
3,474,238	-				-2.2
3,474,369	+				-2.0
3,474,370	-				-0.8
3,474,458	+		PP_3087	0.10	-1.3
3,474,458	+		PP_3087	0.10	+0.8
3,474,458	+		PP_3087	0.10	-0.1
3,474,458	+		PP_3087	0.10	-2.3
3,474,561	-		PP_3087	0.15	+0.9