Strain Fitness in Pseudomonas putida KT2440 around PP_3053

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,433,826	+				-0.0
3,433,827	-				+0.8
3,433,827	-				-3.5
3,433,827	-				+0.1
3,433,906	+				-2.5
3,433,906	+				-0.8
3,433,907	-				+1.3
3,434,179	+		PP_3051	0.55	+0.7
3,434,196	+		PP_3051	0.58	-0.8
3,434,197	-		PP_3051	0.58	-0.1
3,434,200	+		PP_3051	0.58	-2.8
3,434,201	-		PP_3051	0.58	-0.7
3,434,201	-		PP_3051	0.58	-0.7
3,434,382	-		PP_3051	0.88	-1.5
3,434,494	-				+0.7
3,434,617	+		PP_3052	0.46	+1.0
3,434,799	-		PP_3053	0.10	-0.5
3,434,799	-				+1.0
3,435,152	+				-2.0
3,435,152	+				+0.8
3,435,494	+		PP_3054	0.41	+0.1
3,435,494	+		PP_3054	0.41	-0.6
3,435,500	+		PP_3054	0.42	-0.1
3,435,500	+		PP_3054	0.42	-2.4
3,435,501	-		PP_3054	0.42	+0.6
3,435,586	-		PP_3054	0.51	+0.2
3,435,586	-				+1.0
3,435,629	+		PP_3054	0.55	-1.4
3,435,756	+		PP_3054	0.68	-2.4
3,435,756	+		PP_3054	0.68	-1.0
3,435,942	-		PP_3054	0.87	+0.9
3,435,942	-		PP_3054	0.87	-1.4
3,435,942	-		PP_3054	0.87	-1.4
3,435,952	-		PP_3054	0.88	-1.6
3,435,957	+		PP_3054	0.88	-0.4
3,436,022	+				+0.2
3,436,023	-				-2.4