Strain Fitness in Pseudomonas putida KT2440 around PP_3050

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,432,602	+		PP_3048	0.79	-3.3
3,432,603	-				+1.5
3,432,603	-		PP_3048	0.79	+0.3
3,432,603	-		PP_3048	0.79	+0.2
3,432,642	+				-0.6
3,432,643	-				-0.2
3,432,643	-				-2.8
3,432,666	+				-1.5
3,432,667	-				-2.0
3,432,679	-				+1.5
3,432,679	-				-1.4
3,432,679	-				-3.5
3,432,682	+				-3.0
3,432,682	+				-2.6
3,432,852	-		PP_3049	0.28	-1.9
3,432,852	-		PP_3049	0.28	-0.8
3,432,852	-		PP_3049	0.28	-0.7
3,432,873	+		PP_3049	0.31	-0.5
3,432,873	+		PP_3049	0.31	-0.5
3,432,873	+		PP_3049	0.31	-0.6
3,433,021	+		PP_3049	0.53	+0.4
3,433,048	+		PP_3049	0.57	+3.3
3,433,077	+		PP_3049	0.62	-1.9
3,433,125	-		PP_3049	0.69	+2.7
3,433,262	+		PP_3049	0.90	-2.8
3,433,262	+		PP_3049	0.90	-0.3
3,433,262	+		PP_3049	0.90	-3.0
3,433,303	+				-0.0
3,433,355	+				-1.8
3,433,403	+		PP_3050	0.15	-1.8
3,433,404	-		PP_3050	0.15	-0.3
3,433,562	-		PP_3050	0.45	+0.5
3,433,562	-		PP_3050	0.45	-0.5
3,433,575	+		PP_3050	0.48	+0.3
3,433,575	+		PP_3050	0.48	-3.0
3,433,575	+		PP_3050	0.48	+0.5
3,433,575	+		PP_3050	0.48	-3.2
3,433,575	+		PP_3050	0.48	-0.8
3,433,575	+		PP_3050	0.48	-2.8
3,433,576	-		PP_3050	0.48	-0.5
3,433,576	-		PP_3050	0.48	-0.5
3,433,576	-		PP_3050	0.48	-1.9
3,433,576	-		PP_3050	0.48	+0.8
3,433,576	-		PP_3050	0.48	-0.9
3,433,826	+				-0.0
3,433,827	-				+0.8
3,433,827	-				-3.5
3,433,827	-				+0.1
3,433,906	+				-2.5
3,433,906	+				-0.8
3,433,907	-				+1.3
3,434,179	+		PP_3051	0.55	+0.7
3,434,196	+		PP_3051	0.58	-0.8
3,434,197	-		PP_3051	0.58	-0.1
3,434,200	+		PP_3051	0.58	-2.8
3,434,201	-		PP_3051	0.58	-0.7
3,434,201	-		PP_3051	0.58	-0.7
3,434,382	-		PP_3051	0.88	-1.5
3,434,494	-				+0.7
3,434,617	+		PP_3052	0.46	+1.0
3,434,799	-		PP_3053	0.10	-0.5
3,434,799	-				+1.0