Strain Fitness in Pseudomonas putida KT2440 around PP_3025

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,411,206	+				+1.5
3,411,757	-		PP_5551	0.51	-1.9
3,411,870	+		PP_5551	0.73	+1.7
3,411,871	-		PP_5551	0.73	+0.5
3,411,897	+		PP_5551	0.78	+0.5
3,411,898	-		PP_5551	0.78	-0.2
3,411,930	+		PP_5551	0.84	+1.3
3,411,931	-		PP_5551	0.85	-1.5
3,411,936	+		PP_5551	0.86	+1.1
3,411,952	-		PP_5551	0.89	-0.1
3,411,952	-		PP_5551	0.89	+0.7
3,411,984	+				+1.2
3,411,984	+				+0.5
3,412,015	+				-0.7
3,412,015	+				-1.9
3,412,068	-				+0.1
3,412,108	+				+1.3
3,412,108	+				-0.7
3,412,108	+				-2.5
3,412,109	-				-1.1
3,412,109	-				+1.4
3,412,109	-				-1.7
3,412,114	+				-2.8
3,412,132	+				+0.4
3,412,133	-				-1.3
3,412,166	-				+1.2
3,412,183	+				-1.2
3,412,184	-				+0.3
3,412,205	+				+1.5
3,412,206	-				-0.1
3,412,331	+		PP_3025	0.20	+1.0
3,412,332	-		PP_3025	0.21	+0.5
3,412,501	+		PP_3025	0.48	+2.1
3,412,572	-		PP_3025	0.59	-2.5
3,412,607	+		PP_3025	0.65	-2.1
3,412,613	-		PP_3025	0.66	+1.4
3,412,663	+		PP_3025	0.74	-3.3
3,412,663	+		PP_3025	0.74	+1.3
3,412,685	-		PP_3025	0.77	+0.8
3,412,725	-		PP_3025	0.84	+0.1
3,412,795	+				+1.1
3,412,801	+				-1.9
3,412,836	+				-0.2
3,412,903	-				-1.1
3,412,949	+				-2.8
3,412,950	-				+0.1
3,412,952	+				+1.6
3,412,952	+				+0.1
3,412,952	+				-0.2
3,412,952	+				+0.3
3,412,953	-				+1.5
3,412,953	-				-0.9
3,412,954	+				-3.3
3,412,954	+				-2.5
3,412,955	-				+1.1
3,412,955	-				+2.2
3,412,955	-				-2.1
3,412,955	-				+1.1
3,412,956	+				-1.8
3,412,956	+				-0.1
3,412,956	+				-2.2
3,412,956	+				+1.2
3,412,957	-				+0.1
3,412,957	-				-0.6
3,412,990	+				+1.5
3,412,990	+				+0.0
3,412,991	-				+0.2
3,412,991	-				-2.6
3,412,991	-				+0.5
3,413,015	+				-0.1
3,413,015	+				+0.4
3,413,015	+				+0.6
3,413,015	+				-0.6
3,413,015	+				+0.6
3,413,016	-				-0.4
3,413,016	-				-0.1
3,413,021	+				-0.5
3,413,022	-				+0.8
3,413,022	-				-2.1
3,413,022	-				-2.6
3,413,059	+				-1.5
3,413,081	+				+0.1
3,413,081	+				-0.1
3,413,082	-				+2.0
3,413,113	+				+1.5
3,413,113	+				-2.9
3,413,113	+				-3.0
3,413,113	+				-1.2
3,413,114	-				-0.1
3,413,118	+				-0.7
3,413,119	-				+0.8
3,413,119	-				+0.8
3,413,176	+		PP_3026	0.11	+1.7
3,413,190	+		PP_3026	0.12	+0.4
3,413,190	+		PP_3026	0.12	-2.0
3,413,190	+		PP_3026	0.12	+0.5
3,413,286	+		PP_3026	0.18	+0.9
3,413,286	+		PP_3026	0.18	+0.7
3,413,360	+		PP_3026	0.23	-0.2
3,413,402	+		PP_3026	0.25	+2.1
3,413,404	+		PP_3026	0.25	+0.6
3,413,405	-		PP_3026	0.25	-2.8
3,413,611	-		PP_3026	0.38	+1.2
3,413,618	+		PP_3026	0.39	-1.7
3,413,619	-		PP_3026	0.39	+1.4
3,413,684	+		PP_3026	0.43	+1.5
3,413,711	+		PP_3026	0.44	-3.2
3,413,711	+		PP_3026	0.44	-2.9
3,413,802	+		PP_3026	0.50	-2.3