Strain Fitness in Pseudomonas putida KT2440 around PP_3022

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,407,654	-		PP_3020	0.55	+1.5
3,407,698	+		PP_3020	0.61	-2.3
3,407,698	+		PP_3020	0.61	-3.0
3,407,699	-		PP_3020	0.61	-0.8
3,407,699	-		PP_3020	0.61	-0.1
3,408,098	-		PP_3021	0.27	-0.6
3,408,098	-		PP_3021	0.27	-1.1
3,408,105	-		PP_3021	0.29	+0.0
3,408,158	+		PP_3021	0.37	+0.3
3,408,159	-		PP_3021	0.37	+0.2
3,408,299	+		PP_3021	0.60	+1.4
3,408,300	-		PP_3021	0.60	-2.3
3,408,300	-		PP_3021	0.60	+1.7
3,408,300	-		PP_3021	0.60	-0.2
3,408,300	-		PP_3021	0.60	+0.9
3,408,308	+				+1.5
3,408,309	-		PP_3021	0.62	-1.0
3,408,413	-		PP_3021	0.79	+0.2
3,408,596	-				-3.1
3,408,605	+				-2.2
3,408,605	+				-0.5
3,408,605	+				+0.9
3,408,606	-				-2.3
3,408,606	-				-2.5
3,408,606	-				-0.5
3,408,606	-				-2.7
3,408,606	-				+3.0
3,408,612	+				-0.2
3,408,612	+				-2.2
3,408,613	-				+0.5
3,408,613	-				-0.4
3,408,638	+				+0.9
3,408,638	+				+0.3
3,408,713	+		PP_3022	0.11	-2.7
3,408,714	-		PP_3022	0.11	-0.2
3,408,785	+		PP_3022	0.20	-0.1
3,408,785	+				+1.5
3,408,785	+		PP_3022	0.20	-0.1
3,408,786	-		PP_3022	0.20	-0.8
3,408,786	-		PP_3022	0.20	-0.5
3,408,799	-		PP_3022	0.21	+0.0
3,409,072	+		PP_3022	0.55	+0.2
3,409,072	+		PP_3022	0.55	-0.9
3,409,072	+		PP_3022	0.55	-0.0
3,409,072	+		PP_3022	0.55	+0.2
3,409,073	-		PP_3022	0.55	-1.8
3,409,073	-		PP_3022	0.55	-2.9
3,409,092	+		PP_3022	0.58	-1.3
3,409,093	-		PP_3022	0.58	-2.2
3,409,141	+		PP_3022	0.64	+1.3
3,409,142	-		PP_3022	0.64	-0.8
3,409,182	-		PP_3022	0.69	-2.5
3,409,240	+		PP_3022	0.76	-2.6
3,409,241	-		PP_3022	0.76	-2.4
3,409,349	+		PP_3022	0.89	-3.0
3,409,349	+		PP_3022	0.89	-0.0
3,409,349	+		PP_3022	0.89	-1.7
3,409,350	-		PP_3022	0.90	-0.8
3,409,435	+				-0.2
3,409,435	+				-1.3
3,409,436	-				+0.1
3,409,483	+				-0.8
3,409,506	-				+1.3
3,409,630	+				-0.2
3,409,630	+				-1.2
3,409,762	+				-0.5
3,409,772	+				-3.1
3,409,772	+				+1.5
3,409,773	-				-0.5
3,409,776	+				+2.6
3,409,776	+				+0.7
3,409,777	-				-2.5
3,409,777	-				-1.8
3,409,777	-				+0.4
3,409,777	-				-0.4
3,409,777	-				-0.9
3,409,777	-				+0.7
3,409,777	-				-0.3
3,409,808	+				+1.0
3,409,817	+				-1.1
3,409,817	+				+0.1
3,409,817	+				+0.9
3,409,946	+				-2.7
3,410,034	-				+0.3
3,410,064	-				+0.3
3,410,170	+		PP_3024	0.17	-1.8
3,410,170	+		PP_3024	0.17	-2.6
3,410,278	+		PP_3024	0.26	+0.8
3,410,419	+		PP_3024	0.38	-1.5
3,410,420	-		PP_3024	0.38	-1.1
3,410,420	-		PP_3024	0.38	+0.7