Strain Fitness in Pseudomonas putida KT2440 around PP_3008

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,400,485	-		PP_3006	0.85	+1.6
3,400,526	-				+0.6
3,400,590	-				-0.3
3,400,590	-				+1.4
3,400,636	+				+0.1
3,400,636	+				+0.1
3,400,657	+				+0.8
3,400,658	-				+0.1
3,400,658	-				-0.8
3,400,695	+				+0.1
3,400,696	-				-0.5
3,400,696	-				-0.1
3,400,696	-				-0.2
3,400,696	-				-2.5
3,400,696	-				+0.0
3,400,696	-				+2.0
3,400,696	-				+1.0
3,400,696	-				+0.5
3,400,707	+				+2.4
3,400,794	+		PP_3007	0.23	-1.5
3,400,794	+		PP_3007	0.23	-3.3
3,400,794	+		PP_3007	0.23	+0.2
3,400,795	-				-0.5
3,400,795	-		PP_3007	0.23	-1.5
3,400,795	-		PP_3007	0.23	+0.7
3,400,795	-		PP_3007	0.23	+0.4
3,400,795	-		PP_3007	0.23	+0.8
3,400,795	-		PP_3007	0.23	-1.6
3,400,930	+		PP_3007	0.49	-0.3
3,400,948	-		PP_3007	0.52	+0.9
3,400,948	-		PP_3007	0.52	-0.5
3,401,049	+		PP_3007	0.71	+0.6
3,401,049	+		PP_3007	0.71	-0.0
3,401,049	+		PP_3007	0.71	-1.3
3,401,050	-		PP_3007	0.71	+0.6
3,401,050	-		PP_3007	0.71	+0.6
3,401,050	-		PP_3007	0.71	+1.0
3,401,050	-		PP_3007	0.71	-2.3
3,401,188	-				-0.0
3,401,250	+				-0.1
3,401,251	-				+0.8
3,401,251	-				-0.5
3,401,251	-				+1.1
3,401,331	-				+1.3
3,401,379	-				-1.5
3,401,430	+				-1.4
3,401,431	-				-2.9
3,401,433	+				-2.6
3,401,433	+				-2.9
3,401,433	+				+0.6
3,401,434	-				+0.0
3,401,474	-		PP_3008	0.20	-0.0
3,401,491	+		PP_3008	0.26	-0.5
3,401,491	+		PP_3008	0.26	+0.5
3,401,492	-		PP_3008	0.26	-2.4
3,401,492	-		PP_3008	0.26	+0.4
3,401,492	-		PP_3008	0.26	+1.4
3,401,586	-		PP_3008	0.59	+0.2
3,401,586	-		PP_3008	0.59	+2.1
3,401,586	-		PP_3008	0.59	+2.5
3,401,658	-		PP_3008	0.84	-0.1
3,401,658	-		PP_3008	0.84	+0.3
3,401,686	-				-0.6
3,401,686	-				-0.5
3,401,804	+				-0.6
3,401,831	+		PP_3009	0.18	+0.7
3,401,832	-		PP_3009	0.19	+0.5
3,401,832	-		PP_3009	0.19	-2.3
3,401,835	-		PP_3009	0.22	+0.2
3,401,835	-		PP_3009	0.22	-0.4
3,401,835	-		PP_3009	0.22	+0.6
3,401,835	-		PP_3009	0.22	-0.5
3,401,835	-		PP_3009	0.22	-0.8
3,401,865	+		PP_3009	0.53	-0.3
3,401,866	-		PP_3009	0.54	+1.9
3,401,866	-		PP_3009	0.54	+0.9
3,401,885	+		PP_3009	0.73	+1.4
3,401,885	+		PP_3009	0.73	+1.3
3,401,885	+		PP_3009	0.73	+1.3
3,401,886	-		PP_3009	0.74	+0.5
3,401,886	-		PP_3009	0.74	+0.0
3,401,926	-				-0.1
3,401,933	-				+0.5
3,401,981	+				+0.7
3,401,981	+				-2.7
3,401,981	+				+1.3
3,401,982	-				-1.0
3,401,982	-				+0.3
3,401,982	-				-0.9
3,401,982	-				-1.6
3,401,983	+				+0.4
3,401,983	+				-2.5
3,401,983	+				-1.0
3,401,983	+				-0.5
3,401,983	+				-1.5
3,401,984	-				+1.9
3,401,984	-				+1.2
3,401,985	+				+0.5
3,401,985	+				+1.9
3,401,985	+				-0.8
3,401,986	-				-1.9
3,401,986	-				+1.1
3,402,011	+				+2.1
3,402,012	-				-0.3
3,402,140	-				+0.2
3,402,213	+		PP_3010	0.28	-1.6
3,402,214	-		PP_3010	0.29	-1.6
3,402,215	+		PP_3010	0.29	-0.8
3,402,216	-		PP_3010	0.29	-0.2
3,402,216	-		PP_3010	0.29	+0.6
3,402,216	-		PP_3010	0.29	-0.4
3,402,216	-		PP_3010	0.29	-1.5
3,402,250	-		PP_3010	0.38	+1.1
3,402,274	+		PP_3010	0.45	+0.8
3,402,275	-		PP_3010	0.45	-0.0
3,402,295	-		PP_3010	0.51	+1.5
3,402,312	-		PP_3010	0.55	+1.5
3,402,367	+		PP_3010	0.70	-0.8
3,402,367	+		PP_3010	0.70	-2.5
3,402,367	+		PP_3010	0.70	-3.1
3,402,367	+		PP_3010	0.70	+1.0
3,402,368	-		PP_3010	0.70	-0.1
3,402,408	+		PP_3010	0.81	-1.8
3,402,409	-		PP_3010	0.82	+0.9
3,402,409	-		PP_3010	0.82	-2.0
3,402,427	-		PP_3010	0.86	+0.2
3,402,474	+				+0.3
3,402,474	+				-1.0
3,402,497	+				-1.4
3,402,622	+				-1.9
3,402,632	-				+0.9
3,402,668	+		PP_3011	0.11	-2.2
3,402,668	+		PP_3011	0.11	-0.4
3,402,669	-		PP_3011	0.11	-0.6
3,402,669	-		PP_3011	0.11	-2.7
3,402,669	-		PP_3011	0.11	-2.6