Strain Fitness in Pseudomonas putida KT2440 around PP_2981

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,378,275	+		PP_2978	0.80	-0.7
3,378,275	+		PP_2978	0.80	-2.0
3,378,276	-		PP_2978	0.81	+1.9
3,378,276	-		PP_2978	0.81	-2.0
3,378,291	-		PP_2978	0.84	+2.0
3,378,291	-		PP_2978	0.84	-2.1
3,378,349	+				+1.4
3,378,349	+				+2.3
3,378,350	-				-2.3
3,378,351	+				+0.1
3,378,351	+				-1.9
3,378,351	+				-3.3
3,378,351	+				+1.1
3,378,352	-				+0.0
3,378,479	+		PP_2979	0.41	+1.2
3,378,479	+		PP_2979	0.41	-1.4
3,378,503	+		PP_2979	0.47	-2.8
3,378,503	+		PP_2979	0.47	+1.2
3,378,504	-		PP_2979	0.47	-1.7
3,378,504	-		PP_2979	0.47	-1.0
3,378,525	-		PP_2979	0.52	-0.7
3,378,547	-		PP_2979	0.57	-0.7
3,378,606	-		PP_2979	0.71	+0.8
3,378,606	-		PP_2979	0.71	-2.8
3,378,617	+		PP_2979	0.73	+2.1
3,378,618	-		PP_2979	0.74	-0.1
3,378,618	-		PP_2979	0.74	+0.8
3,378,659	-		PP_2979	0.83	-0.2
3,378,659	-		PP_2979	0.83	+0.8
3,378,719	+				+0.0
3,378,735	+				+0.5
3,378,762	-		PP_2980	0.12	+1.9
3,378,813	+		PP_2980	0.33	+0.0
3,378,814	-		PP_2980	0.34	-0.3
3,378,835	+		PP_2980	0.43	+1.2
3,378,875	+		PP_2980	0.59	+0.8
3,378,908	-		PP_2980	0.73	-0.0
3,378,908	-		PP_2980	0.73	+1.9
3,378,908	-		PP_2980	0.73	-1.0
3,378,916	-		PP_2980	0.77	-1.1
3,379,014	+				+0.7
3,379,015	-				+1.8
3,379,066	+				+0.6
3,379,081	+				-0.2
3,379,115	+				+1.1
3,379,116	-				+0.6
3,379,116	-				-2.2
3,379,137	-				+1.8
3,379,178	+				-1.0
3,379,179	-				+1.8
3,379,233	+				+1.4
3,379,233	+				+1.1
3,379,255	+				-0.3
3,379,272	-				+0.3
3,379,303	+		PP_2981	0.13	-2.3
3,379,303	+		PP_2981	0.13	+0.7
3,379,304	-		PP_2981	0.13	-2.9
3,379,304	-		PP_2981	0.13	+1.9
3,379,307	+		PP_2981	0.13	+0.2
3,379,307	+		PP_2981	0.13	-1.6
3,379,307	+		PP_2981	0.13	-2.1
3,379,307	+		PP_2981	0.13	-2.5
3,379,307	+		PP_2981	0.13	+1.0
3,379,307	+		PP_2981	0.13	+1.1
3,379,307	+		PP_2981	0.13	+1.2
3,379,307	+		PP_2981	0.13	+1.6
3,379,307	+		PP_2981	0.13	-2.9
3,379,308	-		PP_2981	0.13	+1.1
3,379,308	-		PP_2981	0.13	-0.5
3,379,308	-		PP_2981	0.13	-2.6
3,379,308	-		PP_2981	0.13	-1.6
3,379,308	-		PP_2981	0.13	+1.7
3,379,308	-		PP_2981	0.13	-1.4
3,379,385	+		PP_2981	0.21	+1.2
3,379,386	-		PP_2981	0.22	+0.9
3,379,386	-		PP_2981	0.22	+0.4
3,379,400	-		PP_2981	0.23	-1.6
3,379,401	+		PP_2981	0.23	+0.1
3,379,541	+		PP_2981	0.37	+1.6
3,379,576	+		PP_2981	0.41	+0.0
3,379,577	-		PP_2981	0.41	+0.0
3,379,580	+		PP_2981	0.41	-2.2
3,379,581	-		PP_2981	0.42	+1.9
3,379,614	+		PP_2981	0.45	-1.2
3,379,614	+		PP_2981	0.45	+0.2
3,379,615	-		PP_2981	0.45	-0.2
3,379,663	-		PP_2981	0.50	+0.3
3,379,941	+		PP_2981	0.79	+0.6
3,379,942	-				+1.6
3,379,942	-		PP_2981	0.79	-0.2
3,379,942	-		PP_2981	0.79	+1.6
3,379,942	-		PP_2981	0.79	-0.1
3,380,090	+				+0.1
3,380,091	-				-2.3
3,380,116	-				-1.8
3,380,125	+				+2.0
3,380,126	-				+0.1
3,380,129	+				-1.0
3,380,253	-				+0.0
3,380,263	-				+0.2
3,380,292	+				-2.6
3,380,292	+				-0.3
3,380,295	+				+1.2
3,380,299	+				+1.5
3,380,300	-				+1.4
3,380,503	-		PP_2982	0.17	+0.3
3,380,564	+		PP_2982	0.24	+0.1
3,380,564	+		PP_2982	0.24	-0.8
3,380,565	-		PP_2982	0.24	-2.0
3,380,565	-				+2.6
3,380,609	+		PP_2982	0.28	+1.4
3,380,609	+		PP_2982	0.28	-1.4
3,380,609	+		PP_2982	0.28	+0.4
3,380,610	-		PP_2982	0.28	-0.7
3,380,882	-		PP_2982	0.55	-1.0
3,380,882	-		PP_2982	0.55	+0.9
3,380,984	+		PP_2982	0.66	+0.9
3,380,984	+		PP_2982	0.66	-1.4
3,380,985	-		PP_2982	0.66	-1.1
3,380,985	-		PP_2982	0.66	-0.4
3,381,083	+		PP_2982	0.75	-0.9
3,381,084	-		PP_2982	0.76	-3.4