Strain Fitness in Pseudomonas putida KT2440 around PP_2977

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,375,949	+				+0.2
3,375,949	+				+0.9
3,375,950	-				-0.4
3,375,998	-				+0.3
3,376,007	+				+0.9
3,376,008	-				+0.7
3,376,023	+				-2.4
3,376,023	+				+0.5
3,376,069	-				+0.8
3,376,092	-				+2.4
3,376,124	-				+1.6
3,376,137	-				-0.6
3,376,273	+		PP_2975	0.43	+0.6
3,376,273	+		PP_2975	0.43	-0.6
3,376,273	+		PP_2975	0.43	-2.8
3,376,273	+		PP_2975	0.43	+1.9
3,376,273	+		PP_2975	0.43	+2.0
3,376,273	+		PP_2975	0.43	-0.3
3,376,274	-		PP_2975	0.43	-0.1
3,376,274	-		PP_2975	0.43	+0.9
3,376,366	+		PP_2975	0.78	-2.8
3,376,367	-		PP_2975	0.78	+0.1
3,376,367	-		PP_2975	0.78	+2.2
3,376,367	-		PP_2975	0.78	-0.8
3,376,424	-				+1.1
3,376,490	-				-0.5
3,376,573	-				-0.7
3,376,623	+		PP_2976	0.16	+0.5
3,376,630	+		PP_2976	0.18	-0.2
3,376,987	+		PP_2977	0.12	+0.4
3,376,988	-		PP_2977	0.12	+0.3
3,377,070	+		PP_2977	0.21	+0.6
3,377,180	-		PP_2977	0.33	+0.0
3,377,328	+		PP_2977	0.49	-0.3
3,377,328	+		PP_2977	0.49	+0.6
3,377,329	-		PP_2977	0.49	+0.6
3,377,329	-		PP_2977	0.49	+0.8
3,377,364	-		PP_2977	0.53	+1.5
3,377,364	-		PP_2977	0.53	+1.2
3,377,490	+		PP_2977	0.67	+1.4
3,377,491	-		PP_2977	0.67	+0.4
3,377,491	-		PP_2977	0.67	-2.8
3,377,566	-		PP_2977	0.76	+1.6
3,377,566	-		PP_2977	0.76	+0.6
3,377,601	+		PP_2977	0.79	-0.6
3,377,601	+		PP_2977	0.79	-0.7
3,377,602	-		PP_2977	0.80	-0.3
3,377,602	-		PP_2977	0.80	+0.4
3,377,602	-		PP_2977	0.80	+0.1
3,377,602	-		PP_2977	0.80	+1.0
3,377,622	-		PP_2977	0.82	+1.1
3,377,716	+				+0.5
3,377,720	+				+2.5
3,377,746	+				+2.8
3,377,746	+				-2.1
3,377,747	-				+0.1
3,377,747	-				-0.5
3,377,748	+				+0.1
3,377,748	+				+0.6
3,377,749	-				+0.6
3,377,749	-				+1.0
3,377,749	-				-1.4
3,377,749	-				-1.1
3,377,829	-				-2.1
3,377,829	-				-0.3
3,377,836	+				-0.3
3,377,837	-				-0.1
3,377,844	-				+0.1
3,377,877	-				-1.6
3,377,877	-				+0.2
3,377,906	-				+0.5
3,377,990	+				-0.8
3,377,990	+				-1.3
3,377,991	-				+0.1
3,378,117	-		PP_2978	0.41	+1.8
3,378,117	-		PP_2978	0.41	-0.5
3,378,163	+		PP_2978	0.52	-0.4
3,378,275	+		PP_2978	0.80	-0.7
3,378,275	+		PP_2978	0.80	-2.0
3,378,276	-		PP_2978	0.81	+1.9
3,378,276	-		PP_2978	0.81	-2.0
3,378,291	-		PP_2978	0.84	+2.0
3,378,291	-		PP_2978	0.84	-2.1
3,378,349	+				+1.4
3,378,349	+				+2.3
3,378,350	-				-2.3
3,378,351	+				+0.1
3,378,351	+				-1.9
3,378,351	+				-3.3
3,378,351	+				+1.1
3,378,352	-				+0.0
3,378,479	+		PP_2979	0.41	+1.2
3,378,479	+		PP_2979	0.41	-1.4
3,378,503	+		PP_2979	0.47	-2.8
3,378,503	+		PP_2979	0.47	+1.2
3,378,504	-		PP_2979	0.47	-1.7
3,378,504	-		PP_2979	0.47	-1.0
3,378,525	-		PP_2979	0.52	-0.7
3,378,547	-		PP_2979	0.57	-0.7
3,378,606	-		PP_2979	0.71	+0.8
3,378,606	-		PP_2979	0.71	-2.8
3,378,617	+		PP_2979	0.73	+2.1
3,378,618	-		PP_2979	0.74	-0.1
3,378,618	-		PP_2979	0.74	+0.8
3,378,659	-		PP_2979	0.83	-0.2
3,378,659	-		PP_2979	0.83	+0.8
3,378,719	+				+0.0
3,378,735	+				+0.5
3,378,762	-		PP_2980	0.12	+1.9