Strain Fitness in Pseudomonas putida KT2440 around PP_2943

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,345,771	+		PP_2942	0.47	+0.6
3,345,772	-		PP_2942	0.47	-0.2
3,345,772	-		PP_2942	0.47	-1.0
3,345,772	-		PP_2942	0.47	-0.6
3,345,778	+		PP_2942	0.47	+0.6
3,345,778	+		PP_2942	0.47	+1.5
3,345,779	-		PP_2942	0.47	-1.7
3,345,836	+		PP_2942	0.52	+3.6
3,345,836	+		PP_2942	0.52	-2.7
3,345,837	-		PP_2942	0.52	+0.7
3,345,841	+		PP_2942	0.52	-1.4
3,345,841	+		PP_2942	0.52	-2.5
3,345,841	+		PP_2942	0.52	-0.6
3,345,842	-		PP_2942	0.52	+2.0
3,345,842	-		PP_2942	0.52	+1.2
3,345,842	-		PP_2942	0.52	+1.3
3,345,842	-		PP_2942	0.52	-0.4
3,345,937	+		PP_2942	0.59	-3.0
3,345,937	+		PP_2942	0.59	-2.4
3,345,938	-		PP_2942	0.59	-2.2
3,345,938	-		PP_2942	0.59	-2.3
3,345,938	-		PP_2942	0.59	+1.3
3,345,938	-		PP_2942	0.59	+1.6
3,345,938	-		PP_2942	0.59	+1.5
3,345,938	-		PP_2942	0.59	-1.7
3,345,938	-		PP_2942	0.59	-0.6
3,346,160	+		PP_2942	0.75	+1.6
3,346,160	+		PP_2942	0.75	+0.6
3,346,161	-		PP_2942	0.75	-0.1
3,346,168	+		PP_2942	0.76	-2.8
3,346,168	+		PP_2942	0.76	+0.8
3,346,168	+		PP_2942	0.76	-1.0
3,346,169	-		PP_2942	0.76	-1.5
3,346,223	-		PP_2942	0.80	-1.0
3,346,223	-		PP_2942	0.80	+0.8
3,346,391	-				-0.1
3,346,391	-				+0.2
3,346,391	-				+0.6
3,346,424	+				-0.9
3,346,425	-				+0.5
3,346,450	-				-1.5
3,346,551	+				-2.1
3,346,551	+				-0.4
3,346,552	-				-2.2
3,346,552	-				+0.7
3,346,634	+				+0.9
3,346,634	+				-0.1
3,346,635	-				-2.6
3,346,635	-				-0.4
3,346,663	+				+1.2
3,346,663	+				+0.5
3,346,663	+				+0.0
3,346,664	-				-2.1
3,346,664	-				+0.8
3,346,666	-				+2.4
3,346,672	-				-0.5
3,346,777	+				+0.9
3,346,953	+		PP_2943	0.26	+2.9
3,346,953	+		PP_2943	0.26	-2.6
3,347,023	+		PP_2943	0.33	+1.5
3,347,039	+		PP_2943	0.34	-0.4
3,347,241	+		PP_2943	0.54	+0.6
3,347,258	+		PP_2943	0.56	-1.2
3,347,258	+		PP_2943	0.56	+0.7
3,347,284	-		PP_2943	0.59	+0.9
3,347,349	+		PP_2943	0.65	+1.3
3,347,349	+		PP_2943	0.65	+1.2
3,347,349	+		PP_2943	0.65	+1.6
3,347,350	-		PP_2943	0.65	+0.8
3,347,381	+		PP_2943	0.68	+0.2
3,347,382	-		PP_2943	0.68	-0.2
3,347,604	+				+0.9
3,347,669	+				+1.3
3,347,701	+				+0.4
3,347,728	-				-0.4
3,347,749	-				-0.5
3,347,749	-				-1.5
3,347,768	+				-1.3
3,347,768	+				-2.6
3,347,768	+				-3.1
3,347,768	+				+0.3
3,347,768	+				-0.2
3,347,769	-				+1.6
3,347,769	-				-0.0
3,347,808	-				-3.6
3,347,899	+		PP_2944	0.11	+0.4
3,347,899	+		PP_2944	0.11	+2.0
3,347,903	+		PP_2944	0.12	-0.7
3,347,903	+		PP_2944	0.12	+0.6
3,347,903	+		PP_2944	0.12	+0.6
3,347,904	-		PP_2944	0.12	+0.8
3,347,904	-		PP_2944	0.12	-1.2
3,347,904	-		PP_2944	0.12	+0.5
3,347,904	-		PP_2944	0.12	-2.7
3,348,063	+		PP_2944	0.20	+1.5
3,348,106	-		PP_2944	0.23	-2.3
3,348,171	+		PP_2944	0.26	-2.7
3,348,172	-		PP_2944	0.26	+1.3
3,348,177	+		PP_2944	0.27	+0.4
3,348,178	-		PP_2944	0.27	+1.7
3,348,178	-		PP_2944	0.27	+0.6
3,348,194	+		PP_2944	0.28	+0.5
3,348,194	+		PP_2944	0.28	-0.5
3,348,194	+		PP_2944	0.28	-1.1
3,348,195	-		PP_2944	0.28	+2.0
3,348,195	-		PP_2944	0.28	-1.7
3,348,195	-		PP_2944	0.28	+0.5
3,348,207	+		PP_2944	0.28	+1.4
3,348,207	+		PP_2944	0.28	+1.8
3,348,207	+		PP_2944	0.28	-1.1
3,348,208	-		PP_2944	0.28	+1.0
3,348,208	-				-0.4
3,348,287	-		PP_2944	0.33	+2.2
3,348,481	+		PP_2944	0.43	+0.6
3,348,494	+		PP_2944	0.44	+1.0
3,348,494	+		PP_2944	0.44	-0.3
3,348,495	-		PP_2944	0.44	+0.0
3,348,495	-		PP_2944	0.44	-1.8
3,348,507	+		PP_2944	0.45	-3.5
3,348,694	+				+1.6
3,348,694	+		PP_2944	0.55	-1.1