Strain Fitness in Pseudomonas putida KT2440 around PP_2935

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,336,889	+				-1.3
3,336,889	+				+0.3
3,336,890	-				+1.7
3,336,890	-				+0.0
3,336,890	-				-2.1
3,336,973	+		PP_2934	0.17	+0.2
3,336,973	+		PP_2934	0.17	+0.4
3,336,973	+		PP_2934	0.17	+1.0
3,336,973	+		PP_2934	0.17	-1.2
3,336,974	-		PP_2934	0.17	+0.7
3,336,975	+		PP_2934	0.17	-0.5
3,336,976	-		PP_2934	0.17	+0.0
3,337,041	+		PP_2934	0.23	+0.3
3,337,083	-		PP_2934	0.27	+1.5
3,337,083	-		PP_2934	0.27	-1.5
3,337,187	+		PP_2934	0.37	+0.3
3,337,356	-		PP_2934	0.53	+0.8
3,337,356	-		PP_2934	0.53	+1.2
3,337,404	+		PP_2934	0.58	-0.4
3,337,404	+		PP_2934	0.58	+0.3
3,337,404	+		PP_2934	0.58	-2.2
3,337,535	+		PP_2934	0.70	-0.4
3,337,535	+		PP_2934	0.70	+0.3
3,337,536	-		PP_2934	0.71	-1.2
3,337,536	-		PP_2934	0.71	-3.0
3,337,566	+		PP_2934	0.73	-0.1
3,337,574	-		PP_2934	0.74	+0.1
3,337,647	+		PP_2934	0.81	-1.6
3,337,648	-		PP_2934	0.81	+0.9
3,337,727	+		PP_2934	0.89	+0.4
3,337,728	-		PP_2934	0.89	-0.5
3,337,730	-		PP_2934	0.89	+0.3
3,337,904	+				-2.2
3,337,905	-				-0.6
3,337,905	-				+1.0
3,337,965	+		PP_2935	0.13	-1.1
3,337,965	+		PP_2935	0.13	+1.8
3,337,966	-		PP_2935	0.13	-1.4
3,337,966	-		PP_2935	0.13	+1.9
3,338,034	+		PP_2935	0.19	+1.9
3,338,157	+		PP_2935	0.29	-1.0
3,338,158	-		PP_2935	0.30	-2.0
3,338,265	+		PP_2935	0.39	-0.6
3,338,266	-		PP_2935	0.39	+1.5
3,338,266	-		PP_2935	0.39	-2.2
3,338,266	-		PP_2935	0.39	-0.4
3,338,268	+		PP_2935	0.39	+2.3
3,338,268	+		PP_2935	0.39	-2.1
3,338,269	-		PP_2935	0.39	+2.8
3,338,269	-		PP_2935	0.39	-2.1
3,338,520	+		PP_2935	0.60	-2.2
3,338,521	-		PP_2935	0.60	-2.1
3,338,828	+		PP_2935	0.86	+0.4
3,338,829	-		PP_2935	0.86	-1.7
3,338,872	-		PP_2935	0.89	+1.4
3,338,872	-		PP_2935	0.89	+1.7
3,338,872	-				+4.0
3,338,925	+				-1.1
3,338,925	+				+1.5
3,338,926	-				-1.7
3,339,115	+				-0.6
3,339,116	-				-0.4
3,339,163	+				+0.6
3,339,164	-				+0.2
3,339,262	-				-0.4
3,339,269	+				+2.8
3,339,269	+				+2.9
3,339,270	-				+2.0
3,339,270	-				-0.4
3,339,278	+				+0.9
3,339,278	+				-2.6
3,339,278	+				+1.6
3,339,278	+				+1.8
3,339,278	+				-1.0
3,339,279	-				+0.0
3,339,279	-				+1.3
3,339,279	-				-1.0
3,339,282	+				-1.7
3,339,669	-		PP_2936	0.27	-0.4
3,339,669	-		PP_2936	0.27	-0.7
3,339,672	-		PP_2936	0.27	+1.7