Strain Fitness in Pseudomonas putida KT2440 around PP_2877

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,277,240	+		PP_2876	0.23	-2.9
3,277,241	-		PP_2876	0.23	-0.6
3,277,285	+		PP_2876	0.27	-1.2
3,277,286	-		PP_2876	0.27	-2.7
3,277,360	+		PP_2876	0.33	-3.0
3,277,454	-		PP_2876	0.42	-2.9
3,277,466	-		PP_2876	0.43	-2.6
3,277,466	-		PP_2876	0.43	-2.2
3,277,466	-		PP_2876	0.43	-1.7
3,277,466	-		PP_2876	0.43	-0.6
3,277,498	+		PP_2876	0.45	+0.5
3,277,499	-		PP_2876	0.46	-3.3
3,277,499	-		PP_2876	0.46	-0.9
3,277,499	-		PP_2876	0.46	-1.9
3,277,612	+		PP_2876	0.55	-1.4
3,277,612	+		PP_2876	0.55	-1.3
3,277,686	+		PP_2876	0.62	-0.2
3,277,686	+		PP_2876	0.62	-0.2
3,277,686	+		PP_2876	0.62	+0.8
3,277,687	-		PP_2876	0.62	-0.7
3,277,687	-		PP_2876	0.62	-0.4
3,277,687	-		PP_2876	0.62	+0.1
3,277,724	+		PP_2876	0.65	+0.8
3,277,726	+		PP_2876	0.65	-2.6
3,277,727	-		PP_2876	0.66	-1.8
3,277,727	-				+2.8
3,277,727	-		PP_2876	0.66	+0.4
3,277,727	-		PP_2876	0.66	+0.2
3,277,727	-		PP_2876	0.66	+1.1
3,277,787	-		PP_2876	0.71	+2.4
3,277,856	-		PP_2876	0.77	-1.1
3,277,890	-		PP_2876	0.80	-0.8
3,277,905	+		PP_2876	0.81	+1.8
3,277,934	-		PP_2876	0.84	-0.4
3,277,942	+		PP_2876	0.84	-1.7
3,277,942	+		PP_2876	0.84	-0.8
3,277,943	-		PP_2876	0.84	-1.6
3,277,943	-		PP_2876	0.84	-0.6
3,277,943	-		PP_2876	0.84	+0.2
3,277,963	+		PP_2876	0.86	+1.8
3,277,963	+		PP_2876	0.86	-3.1
3,277,964	-		PP_2876	0.86	+0.8
3,277,964	-		PP_2876	0.86	-2.3
3,277,964	-		PP_2876	0.86	+0.3
3,277,964	-		PP_2876	0.86	+0.2
3,278,037	+				-1.8
3,278,070	+				-3.3
3,278,070	+				+1.4
3,278,070	+				+0.8
3,278,071	-				-2.9
3,278,071	-				-2.3
3,278,071	-				-0.2
3,278,157	-				+0.4
3,278,200	+				+0.0
3,278,200	+				-2.2
3,278,232	+				+1.6
3,278,246	-				-0.2
3,278,259	-				-1.1
3,278,259	-				-1.2
3,278,294	+				+0.8
3,278,309	+				-1.8
3,278,338	+		PP_2877	0.11	+0.8
3,278,447	+		PP_2877	0.22	-0.3
3,278,447	+		PP_2877	0.22	-0.0
3,278,447	+		PP_2877	0.22	-2.2
3,278,448	-		PP_2877	0.22	-0.3
3,278,448	-		PP_2877	0.22	+1.8
3,278,513	+		PP_2877	0.29	-1.2
3,278,536	+		PP_2877	0.31	-2.9
3,278,551	+		PP_2877	0.32	+0.8
3,278,551	+		PP_2877	0.32	-1.1
3,278,551	+		PP_2877	0.32	+1.9
3,278,693	+		PP_2877	0.47	+0.3
3,278,693	+				+1.8
3,278,712	+		PP_2877	0.48	-2.9
3,278,713	-		PP_2877	0.49	-0.4
3,278,869	+		PP_2877	0.64	-2.6
3,278,869	+		PP_2877	0.64	+0.2
3,279,066	+		PP_2877	0.84	-2.3
3,279,149	+				-0.4
3,279,149	+				+2.2
3,279,150	-				-1.3
3,279,150	-				-1.4
3,279,184	+				+0.3
3,279,184	+				+1.2
3,279,185	-				+0.8
3,279,237	-				-1.4
3,279,248	+				+1.0
3,279,248	+				+0.6
3,279,248	+				-1.7
3,279,249	-				-3.2
3,279,249	-				-0.2
3,279,308	-		PP_2878	0.31	-2.2
3,279,388	-		PP_2878	0.75	-0.3
3,279,461	+				+1.4
3,279,462	-				+2.2
3,279,462	-				-1.5
3,279,581	+		PP_2879	0.16	-0.1
3,279,581	+		PP_2879	0.16	-0.6
3,279,583	+		PP_2879	0.16	-0.6
3,279,584	-		PP_2879	0.16	+0.5
3,279,584	-		PP_2879	0.16	-1.9
3,279,619	+		PP_2879	0.22	-0.8
3,279,619	+		PP_2879	0.22	+0.1
3,279,620	-		PP_2879	0.23	+0.3
3,279,620	-		PP_2879	0.23	-0.4
3,279,711	-		PP_2879	0.38	-1.3
3,279,711	-		PP_2879	0.38	-0.2
3,279,711	-		PP_2879	0.38	+0.3
3,279,739	-		PP_2879	0.43	+0.8
3,279,836	+		PP_2879	0.59	-1.9
3,279,837	-		PP_2879	0.59	+0.2
3,279,837	-		PP_2879	0.59	-1.1
3,279,899	-		PP_2879	0.70	-0.6
3,279,899	-				-0.2
3,280,000	+		PP_2879	0.87	-1.7
3,280,000	+		PP_2879	0.87	-0.1
3,280,067	+				-0.1
3,280,118	-				-2.4