Strain Fitness in Pseudomonas putida KT2440 around PP_2869

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,269,247	+				+1.8
3,269,248	-		PP_2867	0.86	-0.6
3,269,248	-		PP_2867	0.86	-0.4
3,269,248	-		PP_2867	0.86	-1.2
3,269,452	+				+0.4
3,269,453	-				+1.2
3,269,453	-				-0.5
3,269,472	-				-1.0
3,269,472	-				-2.5
3,269,472	-				-1.8
3,269,680	+		PP_2868	0.31	+0.4
3,269,680	+		PP_2868	0.31	-1.8
3,269,680	+		PP_2868	0.31	+0.2
3,269,681	-		PP_2868	0.31	+1.6
3,269,695	+		PP_2868	0.34	+1.3
3,269,695	+		PP_2868	0.34	-2.0
3,269,695	+		PP_2868	0.34	-1.0
3,269,782	+		PP_2868	0.48	+0.5
3,269,782	+		PP_2868	0.48	+0.6
3,269,782	+		PP_2868	0.48	-2.0
3,269,818	+		PP_2868	0.54	-2.7
3,269,818	+		PP_2868	0.54	+0.9
3,269,819	-		PP_2868	0.54	-1.8
3,269,819	-		PP_2868	0.54	-0.5
3,269,819	-		PP_2868	0.54	+0.2
3,269,951	-		PP_2868	0.76	-1.2
3,270,121	+				-0.5
3,270,121	+				+1.6
3,270,121	+				+0.9
3,270,121	+				-2.5
3,270,121	+				+0.6
3,270,121	+				-1.4
3,270,122	-				+1.1
3,270,122	-				+1.1
3,270,125	+				+0.4
3,270,125	+				-0.3
3,270,213	+				+0.2
3,270,214	-				-0.8
3,270,214	-				+1.2
3,270,423	+		PP_2869	0.15	-2.8
3,270,423	+		PP_2869	0.15	-2.7
3,270,423	+		PP_2869	0.15	-0.0
3,270,424	-		PP_2869	0.15	-2.8
3,270,428	-		PP_2869	0.15	+0.8
3,270,428	-		PP_2869	0.15	+0.7
3,270,428	-		PP_2869	0.15	+2.0
3,270,601	-		PP_2869	0.24	+0.5
3,270,637	+		PP_2869	0.26	+2.7
3,270,726	+		PP_2869	0.30	-0.1
3,270,726	+		PP_2869	0.30	-2.9
3,270,727	-		PP_2869	0.30	+0.2
3,270,727	-		PP_2869	0.30	+0.4
3,270,727	-		PP_2869	0.30	+1.2
3,270,727	-		PP_2869	0.30	+0.4
3,270,761	+		PP_2869	0.32	+1.0
3,270,796	-		PP_2869	0.34	+1.4
3,270,807	+		PP_2869	0.35	+1.6
3,270,808	-		PP_2869	0.35	+0.2
3,270,808	-		PP_2869	0.35	+0.7
3,270,956	-		PP_2869	0.42	-0.5
3,271,249	+		PP_2869	0.57	+1.3
3,271,250	-		PP_2869	0.57	+0.0
3,271,250	-		PP_2869	0.57	-0.5
3,271,322	+		PP_2869	0.61	+1.9
3,271,322	+		PP_2869	0.61	-0.2
3,271,524	+		PP_2869	0.71	-1.4
3,271,524	+		PP_2869	0.71	-0.3
3,271,525	-		PP_2869	0.71	-1.4
3,272,255	+				-1.9
3,272,255	+				-0.4
3,272,255	+				+0.2
3,272,256	-				-2.0
3,272,256	-				-1.0
3,272,256	-				-1.0
3,272,266	+				-0.7
3,272,266	+				+0.5
3,272,267	-				-0.8
3,272,267	-				+1.2
3,272,267	-				+1.2
3,272,267	-				+1.0
3,272,267	-				+0.2
3,272,269	-				+0.2
3,272,269	-				+0.3
3,272,269	-				+0.4
3,272,443	-		PP_2870	0.18	-0.1
3,272,443	-		PP_2870	0.18	+0.3
3,272,443	-		PP_2870	0.18	-0.8
3,272,554	-		PP_2870	0.28	+1.2
3,272,554	-		PP_2870	0.28	-0.4
3,272,658	+		PP_2870	0.38	-1.5
3,272,659	-		PP_2870	0.38	+0.0
3,272,757	+		PP_2870	0.48	-2.2
3,272,757	+		PP_2870	0.48	-2.3
3,272,806	+		PP_2870	0.52	-2.7
3,272,806	+		PP_2870	0.52	+0.2
3,272,807	-		PP_2870	0.52	+0.8
3,272,807	-		PP_2870	0.52	-0.8
3,272,807	-		PP_2870	0.52	-2.1
3,272,807	-		PP_2870	0.52	-0.0
3,272,807	-		PP_2870	0.52	-1.9
3,272,807	-		PP_2870	0.52	-1.3
3,272,816	-		PP_2870	0.53	-1.2
3,272,949	+		PP_2870	0.66	-0.0
3,272,950	-		PP_2870	0.66	+2.8
3,273,001	+		PP_2870	0.71	+0.3
3,273,002	-		PP_2870	0.71	-2.5
3,273,018	+		PP_2870	0.73	+0.0
3,273,019	-		PP_2870	0.73	+0.8
3,273,019	-		PP_2870	0.73	+1.5