Strain Fitness in Pseudomonas putida KT2440 around PP_2865

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,265,547	+		PP_2862	0.84	+0.1
3,265,579	-		PP_2862	0.88	-1.3
3,265,579	-		PP_2862	0.88	+1.1
3,265,579	-				+0.8
3,265,579	-		PP_2862	0.88	-2.9
3,265,582	+		PP_2862	0.88	+0.1
3,265,583	-		PP_2862	0.89	-0.3
3,265,850	+		PP_2863	0.38	-1.9
3,265,851	-		PP_2863	0.38	+0.4
3,265,876	+		PP_2863	0.45	-2.7
3,265,876	+		PP_2863	0.45	-0.5
3,265,877	-		PP_2863	0.45	+0.7
3,265,891	+		PP_2863	0.49	-2.6
3,265,892	-		PP_2863	0.49	+0.2
3,265,892	-		PP_2863	0.49	-2.6
3,266,067	-				-1.5
3,266,067	-				+1.1
3,266,095	-				-1.4
3,266,187	+		PP_2864	0.12	-2.0
3,266,188	-		PP_2864	0.12	+0.1
3,266,281	+		PP_2864	0.37	-0.1
3,266,428	+		PP_2864	0.77	-0.2
3,266,501	+				-1.2
3,266,501	+				-1.9
3,266,501	+				-1.6
3,266,501	+				-2.1
3,266,502	-				+0.6
3,266,502	-				+3.8
3,266,502	-				-2.1
3,266,601	-		PP_2865	0.12	-2.1
3,266,707	+		PP_2865	0.24	+1.6
3,266,719	-		PP_2865	0.25	-2.8
3,266,722	+		PP_2865	0.25	-2.2
3,266,722	+		PP_2865	0.25	-2.5
3,266,722	+		PP_2865	0.25	+1.3
3,266,723	-		PP_2865	0.25	-3.0
3,266,803	+		PP_2865	0.34	-2.4
3,266,803	+		PP_2865	0.34	-3.0
3,266,963	-		PP_2865	0.52	-0.3
3,267,019	+		PP_2865	0.58	+0.7
3,267,019	+		PP_2865	0.58	-2.2
3,267,020	-		PP_2865	0.58	+0.7
3,267,020	-		PP_2865	0.58	+1.0
3,267,020	-		PP_2865	0.58	-0.2
3,267,020	-		PP_2865	0.58	-2.9
3,267,020	-		PP_2865	0.58	-2.6
3,267,115	+		PP_2865	0.69	-2.8
3,267,115	+		PP_2865	0.69	-1.6
3,267,203	+		PP_2865	0.79	-1.8
3,267,203	+		PP_2865	0.79	-0.3
3,267,203	+		PP_2865	0.79	+0.2
3,267,204	-		PP_2865	0.79	-1.6
3,267,204	-		PP_2865	0.79	+1.7
3,267,204	-		PP_2865	0.79	-2.7
3,267,204	-		PP_2865	0.79	+0.4
3,267,385	-				-1.0
3,267,385	-				+0.5
3,267,720	+		PP_2866	0.31	-2.1
3,267,720	+		PP_2866	0.31	-1.4
3,267,721	-		PP_2866	0.31	-2.5
3,267,815	+		PP_2866	0.47	-1.1
3,267,815	+		PP_2866	0.47	-1.1
3,267,815	+		PP_2866	0.47	-0.8
3,267,816	-		PP_2866	0.47	-2.8
3,267,888	-		PP_2866	0.58	-0.1
3,268,064	+		PP_2866	0.87	-0.9
3,268,065	-		PP_2866	0.87	+0.2
3,268,201	+				-0.2
3,268,274	+				+0.5
3,268,364	+		PP_2867	0.13	+0.4
3,268,365	-		PP_2867	0.13	-0.5