Strain Fitness in Pseudomonas putida KT2440 around PP_2841

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,244,821	-		PP_2840	0.43	-0.6
3,244,914	-		PP_2840	0.51	-2.7
3,244,914	-		PP_2840	0.51	-0.9
3,244,931	+		PP_2840	0.52	+2.1
3,244,970	+		PP_2840	0.56	-0.7
3,244,971	-		PP_2840	0.56	+0.6
3,245,159	-		PP_2840	0.72	-0.9
3,245,518	-				-1.5
3,245,743	+				-1.5
3,245,743	+				-2.6
3,245,743	+				+0.3
3,245,744	-				-0.3
3,245,744	-				-1.0
3,245,744	-				+0.6
3,245,744	-				+1.3
3,245,785	+				-2.3
3,245,786	-				+0.5
3,245,786	-				-2.3
3,245,932	+		PP_2841	0.21	-1.1
3,245,933	-		PP_2841	0.21	-1.1
3,245,933	-		PP_2841	0.21	+0.2
3,245,933	-		PP_2841	0.21	-2.9
3,246,006	+		PP_2841	0.30	-2.2
3,246,122	+		PP_2841	0.43	-2.7
3,246,122	+		PP_2841	0.43	+0.4
3,246,122	+		PP_2841	0.43	+0.6
3,246,262	+		PP_2841	0.59	+1.6
3,246,415	+		PP_2841	0.76	-1.7
3,246,415	+		PP_2841	0.76	-1.5
3,246,415	+		PP_2841	0.76	-0.7
3,246,418	+		PP_2841	0.76	+0.0
3,246,418	+		PP_2841	0.76	+0.0
3,246,418	+		PP_2841	0.76	-0.2
3,246,568	+				+0.0
3,246,568	+				-0.3
3,246,569	-				-0.0
3,246,569	-				-2.1
3,246,632	+				-1.4
3,246,633	-				+0.8
3,246,666	-				-1.8
3,246,756	+				+1.1
3,246,757	-				-0.3
3,246,794	+				-1.7
3,246,795	-				+0.3
3,246,797	-				-2.8
3,247,046	+		PP_2842	0.17	-1.6
3,247,073	+		PP_2842	0.21	-0.9
3,247,073	+		PP_2842	0.21	+0.5
3,247,073	+		PP_2842	0.21	-2.3
3,247,073	+		PP_2842	0.21	+0.0
3,247,074	-		PP_2842	0.21	-2.6
3,247,074	-		PP_2842	0.21	-1.4
3,247,074	-		PP_2842	0.21	-1.4
3,247,185	-		PP_2842	0.34	+1.3
3,247,500	+		PP_2842	0.72	-2.3
3,247,561	-		PP_2842	0.79	-1.3