Strain Fitness in Pseudomonas putida KT2440 around PP_2838

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,239,396	+				+0.3
3,239,396	+		PP_2837	0.40	-3.3
3,239,422	+		PP_2837	0.42	-2.2
3,239,423	-		PP_2837	0.42	-0.3
3,239,423	-		PP_2837	0.42	+0.0
3,239,423	-		PP_2837	0.42	+0.7
3,239,521	+		PP_2837	0.50	-2.3
3,239,521	+		PP_2837	0.50	+0.9
3,239,560	-		PP_2837	0.53	+0.6
3,239,596	+		PP_2837	0.55	-0.7
3,239,597	-		PP_2837	0.55	+0.8
3,239,597	-		PP_2837	0.55	+2.3
3,239,597	-		PP_2837	0.55	+0.3
3,239,597	-		PP_2837	0.55	-2.0
3,239,662	+		PP_2837	0.60	-2.3
3,239,663	-		PP_2837	0.60	-0.4
3,239,663	-		PP_2837	0.60	+2.9
3,239,692	+		PP_2837	0.63	+1.4
3,239,693	-		PP_2837	0.63	+2.7
3,239,748	-		PP_2837	0.67	+0.3
3,239,748	-		PP_2837	0.67	+0.5
3,239,896	-		PP_2837	0.78	+1.0
3,239,987	-		PP_2837	0.85	-1.3
3,240,100	+				-1.5
3,240,101	-				-2.3
3,240,114	-				-2.2
3,240,114	-				+0.1
3,240,114	-				-2.6
3,240,263	+				+2.1
3,240,336	-				+0.5
3,240,338	+				-1.3
3,240,339	-				-1.8
3,240,346	+				-2.5
3,240,346	+				+1.0
3,240,346	+				-0.9
3,240,346	+				+1.2
3,240,346	+				-2.0
3,240,346	+				-2.7
3,240,346	+				-2.3
3,240,347	-				-0.2
3,240,798	+		PP_2838	0.30	+0.0
3,240,798	+		PP_2838	0.30	-0.2
3,241,118	+		PP_2838	0.49	-1.5
3,241,119	-		PP_2838	0.49	-1.4
3,241,335	+		PP_2838	0.62	-1.9
3,241,336	-		PP_2838	0.62	-2.3
3,241,336	-		PP_2838	0.62	-1.0
3,241,336	-		PP_2838	0.62	-0.8
3,241,425	-		PP_2838	0.68	-3.3
3,241,606	+		PP_2838	0.79	+0.3
3,241,634	+		PP_2838	0.81	+0.0
3,241,634	+		PP_2838	0.81	-1.5
3,241,634	+		PP_2838	0.81	-1.4
3,241,634	+		PP_2838	0.81	-0.9
3,241,635	-		PP_2838	0.81	-2.0
3,241,635	-		PP_2838	0.81	-2.3
3,241,635	-		PP_2838	0.81	-1.0
3,241,957	+				-1.4
3,241,957	+				-1.1
3,241,957	+				+0.5
3,241,958	-				-2.5
3,241,958	-				-0.4
3,242,093	-				+0.6
3,242,263	+		PP_2839	0.15	+2.9
3,242,263	+		PP_2839	0.15	+1.6
3,242,264	-		PP_2839	0.15	+1.9
3,242,351	+		PP_2839	0.19	+1.8
3,242,352	-		PP_2839	0.19	-0.1
3,242,533	+		PP_2839	0.27	-0.9
3,242,533	+		PP_2839	0.27	-2.1
3,242,533	+		PP_2839	0.27	-3.2
3,242,534	-		PP_2839	0.27	+0.7
3,242,601	+		PP_2839	0.30	-0.4
3,242,601	+		PP_2839	0.30	-0.4
3,242,602	-		PP_2839	0.30	+0.3
3,242,602	-		PP_2839	0.30	-1.4
3,242,830	+		PP_2839	0.40	-1.7
3,242,929	+		PP_2839	0.44	+2.2
3,242,933	-		PP_2839	0.44	-2.6
3,242,933	-		PP_2839	0.44	+0.4