Strain Fitness in Pseudomonas putida KT2440 around PP_2812

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,205,396	+		PP_2811	0.42	-1.5
3,205,396	+		PP_2811	0.42	+1.2
3,205,397	-		PP_2811	0.43	-0.9
3,205,400	-		PP_2811	0.43	+1.2
3,205,400	-		PP_2811	0.43	-0.0
3,205,400	-		PP_2811	0.43	-0.9
3,205,444	+		PP_2811	0.45	-2.2
3,205,444	+		PP_2811	0.45	+0.0
3,205,444	+		PP_2811	0.45	-0.9
3,205,445	-		PP_2811	0.45	-0.3
3,205,445	-		PP_2811	0.45	-2.3
3,205,486	+		PP_2811	0.48	+0.5
3,205,570	+		PP_2811	0.53	+1.8
3,205,571	-		PP_2811	0.53	-1.5
3,205,571	-		PP_2811	0.53	+1.6
3,205,571	-		PP_2811	0.53	-1.1
3,205,571	-		PP_2811	0.53	+0.6
3,205,571	-		PP_2811	0.53	+0.9
3,205,687	+		PP_2811	0.60	-0.2
3,205,687	+		PP_2811	0.60	-1.8
3,205,687	+		PP_2811	0.60	+0.0
3,205,687	+		PP_2811	0.60	-1.8
3,205,687	+		PP_2811	0.60	+0.3
3,205,688	-		PP_2811	0.60	+0.6
3,206,083	+		PP_2811	0.84	-2.8
3,206,084	-		PP_2811	0.84	+0.3
3,206,084	-		PP_2811	0.84	-1.5
3,206,084	-		PP_2811	0.84	-1.8
3,206,296	+				+3.1
3,206,297	-				+1.4
3,206,371	+				-2.1
3,206,541	+				+0.8
3,206,542	-				-1.2
3,206,542	-				-2.2
3,206,624	+		PP_2812	0.11	-0.2
3,206,625	-		PP_2812	0.11	+2.1
3,206,625	-		PP_2812	0.11	+0.2
3,206,626	+		PP_2812	0.11	-0.8
3,206,626	+		PP_2812	0.11	+0.6
3,206,626	+		PP_2812	0.11	-1.8
3,206,626	+		PP_2812	0.11	+0.9
3,206,627	-		PP_2812	0.11	+0.6
3,206,627	-		PP_2812	0.11	-0.9
3,206,627	-		PP_2812	0.11	+0.7
3,206,627	-		PP_2812	0.11	-3.5
3,206,627	-		PP_2812	0.11	+1.8
3,206,655	+		PP_2812	0.13	+0.5
3,206,655	+		PP_2812	0.13	+0.9
3,206,655	+		PP_2812	0.13	+1.4
3,206,946	+		PP_2812	0.25	+2.2
3,206,947	-		PP_2812	0.25	+0.8
3,206,947	-		PP_2812	0.25	+1.9
3,206,947	-		PP_2812	0.25	+1.2
3,207,071	-		PP_2812	0.30	+2.3
3,207,117	+		PP_2812	0.32	-1.7
3,207,118	-		PP_2812	0.32	-2.0
3,207,439	+		PP_2812	0.45	-0.3
3,207,478	-		PP_2812	0.47	+1.9
3,207,775	-		PP_2812	0.59	-0.4
3,207,775	-		PP_2812	0.59	-0.4
3,207,969	+		PP_2812	0.67	+1.0
3,207,969	+		PP_2812	0.67	+0.1
3,207,970	-		PP_2812	0.67	-1.7
3,208,020	+		PP_2812	0.69	-2.1
3,208,099	-		PP_2812	0.72	-2.1
3,208,226	+		PP_2812	0.78	+0.8
3,208,226	+		PP_2812	0.78	-2.1
3,208,269	+		PP_2812	0.79	-2.5
3,208,269	+		PP_2812	0.79	-2.0
3,208,269	+		PP_2812	0.79	-2.0
3,208,270	-		PP_2812	0.79	-0.3
3,208,270	-		PP_2812	0.79	-2.4
3,208,270	-		PP_2812	0.79	-0.8
3,208,270	-		PP_2812	0.79	+0.3
3,208,276	-		PP_2812	0.80	-1.7
3,208,276	-		PP_2812	0.80	-0.1
3,208,412	+		PP_2812	0.85	-1.1
3,208,413	-		PP_2812	0.85	+0.3
3,208,413	-		PP_2812	0.85	+0.3
3,208,413	-		PP_2812	0.85	+0.7
3,208,413	-		PP_2812	0.85	+2.9
3,208,413	-		PP_2812	0.85	-1.7
3,208,413	-		PP_2812	0.85	-1.1
3,208,464	+		PP_2812	0.87	-0.3
3,208,470	+		PP_2812	0.88	-0.4
3,208,470	+		PP_2812	0.88	+2.3
3,208,471	-		PP_2812	0.88	-1.1
3,208,471	-		PP_2812	0.88	-1.9
3,208,727	+				+2.2
3,209,332	+		PP_2813	0.58	+0.4
3,209,357	+		PP_2813	0.60	+1.9
3,209,358	-		PP_2813	0.60	+0.3
3,209,358	-		PP_2813	0.60	+0.0
3,209,358	-		PP_2813	0.60	-1.8
3,209,358	-		PP_2813	0.60	+0.6
3,209,694	-				+0.9
3,209,699	+				+0.9
3,209,700	-				-1.5