Strain Fitness in Pseudomonas putida KT2440 around PP_2805

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,196,674	+		PP_2804	0.47	+0.5
3,196,674	+		PP_2804	0.47	+1.1
3,196,675	-		PP_2804	0.48	+1.5
3,196,675	-		PP_2804	0.48	+1.3
3,196,869	-		PP_2804	0.70	-2.1
3,197,016	-		PP_2804	0.87	+0.8
3,197,255	-				+0.9
3,197,319	+		PP_2805	0.12	-0.6
3,197,319	+		PP_2805	0.12	-3.4
3,197,320	-		PP_2805	0.12	+1.2
3,197,320	-		PP_2805	0.12	+1.9
3,197,323	+		PP_2805	0.13	+0.5
3,197,393	-		PP_2805	0.17	+0.1
3,197,625	-		PP_2805	0.32	+0.4
3,197,658	+		PP_2805	0.35	+2.6
3,197,658	+		PP_2805	0.35	+1.1
3,197,659	-		PP_2805	0.35	-1.9
3,198,001	+		PP_2805	0.57	+0.2
3,198,001	+		PP_2805	0.57	-1.4
3,198,001	+		PP_2805	0.57	-0.3
3,198,002	-		PP_2805	0.57	+0.6
3,198,002	-		PP_2805	0.57	-2.2
3,198,002	-		PP_2805	0.57	+1.0
3,198,112	+		PP_2805	0.64	+1.7
3,198,113	-		PP_2805	0.64	-2.4
3,198,203	-		PP_2805	0.70	+0.4
3,198,208	+		PP_2805	0.71	+1.9
3,198,208	+		PP_2805	0.71	+2.1
3,198,208	+		PP_2805	0.71	+0.9
3,198,209	-		PP_2805	0.71	+0.0
3,198,211	+		PP_2805	0.71	+1.8
3,198,457	+		PP_2805	0.87	+0.2
3,198,666	+				+2.0
3,198,666	+				+0.9
3,198,666	+				-0.1
3,198,666	+				+0.8
3,198,677	+				+1.0
3,198,677	+				+0.3
3,198,678	-				+1.6
3,198,767	+				-0.1
3,198,829	-				+1.3
3,198,829	-				-0.2
3,198,832	+				-2.3
3,198,832	+				+0.7
3,198,832	+				+0.5
3,198,938	-				+0.8
3,199,064	+		PP_2806	0.23	+1.7
3,199,064	+		PP_2806	0.23	+0.4
3,199,145	-		PP_2806	0.36	+1.7
3,199,145	-				+0.4
3,199,145	-		PP_2806	0.36	+2.7
3,199,346	-		PP_2806	0.71	-2.3
3,199,346	-		PP_2806	0.71	+0.2
3,199,346	-		PP_2806	0.71	-1.5
3,199,375	+		PP_2806	0.76	+0.5
3,199,375	+		PP_2806	0.76	+0.7
3,199,375	+		PP_2806	0.76	+0.3
3,199,375	+		PP_2806	0.76	-1.5
3,199,376	-		PP_2806	0.76	+0.9
3,199,643	+				+0.2