Strain Fitness in Pseudomonas putida KT2440 around PP_2799

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,188,721	+		PP_2798	0.46	+1.9
3,188,822	+		PP_2798	0.57	-0.7
3,188,830	+		PP_2798	0.58	+0.9
3,188,830	+		PP_2798	0.58	-0.5
3,188,846	+		PP_2798	0.60	-1.8
3,188,912	+		PP_2798	0.67	-1.1
3,188,925	+		PP_2798	0.68	+0.1
3,188,925	+		PP_2798	0.68	-0.1
3,189,240	-				-1.2
3,189,247	+				+1.2
3,189,248	-				-2.5
3,189,443	-		PP_2799	0.13	+1.7
3,189,729	+		PP_2799	0.33	-0.1
3,189,729	+		PP_2799	0.33	+0.4
3,189,775	+		PP_2799	0.37	-1.9
3,189,776	-		PP_2799	0.37	+0.9
3,189,776	-		PP_2799	0.37	-1.1
3,189,827	-		PP_2799	0.40	-2.5
3,189,934	+		PP_2799	0.48	+1.4
3,190,023	-		PP_2799	0.55	-0.8
3,190,023	-		PP_2799	0.55	-1.2
3,190,024	+		PP_2799	0.55	-0.9
3,190,024	+		PP_2799	0.55	-1.8
3,190,024	+		PP_2799	0.55	-2.5
3,190,025	-		PP_2799	0.55	-0.1
3,190,025	-		PP_2799	0.55	+0.6
3,190,025	-		PP_2799	0.55	-0.4
3,190,056	-		PP_2799	0.57	-1.4
3,190,056	-		PP_2799	0.57	-2.8
3,190,201	+		PP_2799	0.67	-2.9
3,190,405	+		PP_2799	0.82	-1.1
3,190,405	+		PP_2799	0.82	-2.9
3,190,408	+		PP_2799	0.82	-1.5
3,191,478	+		PP_2800	0.58	+0.5
3,191,494	-		PP_2800	0.60	-0.6
3,191,583	+		PP_2800	0.67	-1.6
3,191,592	+		PP_2800	0.68	+0.2