Strain Fitness in Pseudomonas putida KT2440 around PP_2772

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,155,331	-		PP_2771	0.16	+1.1
3,155,569	-		PP_2771	0.37	+0.2
3,155,569	-		PP_2771	0.37	+0.8
3,155,607	-		PP_2771	0.41	-1.0
3,155,617	-		PP_2771	0.41	-2.9
3,155,695	-		PP_2771	0.49	+0.5
3,155,725	-		PP_2771	0.51	-2.9
3,155,727	+		PP_2771	0.51	-1.8
3,155,727	+		PP_2771	0.51	+0.6
3,155,728	-		PP_2771	0.52	-1.4
3,155,728	-		PP_2771	0.52	+1.5
3,156,077	+		PP_2771	0.83	-0.0
3,156,077	+		PP_2771	0.83	+2.0
3,156,077	+		PP_2771	0.83	-1.5
3,156,078	-		PP_2771	0.83	-2.6
3,156,272	+				+0.6
3,156,272	+				+0.3
3,156,279	-				+2.1
3,156,384	-				-0.8
3,156,621	-		PP_2772	0.29	-1.0
3,156,635	+		PP_2772	0.31	-1.9
3,156,636	-		PP_2772	0.31	-1.7
3,156,636	-		PP_2772	0.31	+0.0
3,156,636	-		PP_2772	0.31	-2.4
3,156,636	-		PP_2772	0.31	-2.0
3,156,733	-		PP_2772	0.39	+0.6
3,157,066	+		PP_2772	0.67	+2.4
3,157,067	-		PP_2772	0.67	-3.1
3,157,171	+		PP_2772	0.76	-1.7
3,157,536	+		PP_2773	0.14	+0.6
3,157,537	-		PP_2773	0.14	+2.9
3,157,730	-				-1.8
3,157,732	-				-2.6
3,157,732	-				-1.2
3,157,732	-				-0.2
3,157,732	-				+3.0
3,157,993	+				+1.0
3,157,994	-				+0.8
3,157,994	-				-1.6
3,157,998	-				-3.2
3,158,077	+				-2.4
3,158,111	+				-1.4
3,158,198	-		PP_2774	0.10	-2.1
3,158,308	+		PP_2774	0.16	+0.4