Strain Fitness in Pseudomonas putida KT2440 around PP_2760

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,143,665	+		PP_2759	0.38	-1.9
3,143,677	+		PP_2759	0.39	+1.7
3,144,382	+		PP_2759	0.85	+0.6
3,144,592	+				-0.2
3,144,593	-				-0.6
3,144,593	-				+1.2
3,144,593	-				-1.9
3,144,598	+				-2.3
3,144,598	+				-1.2
3,144,598	+				-2.3
3,144,599	-				-1.8
3,144,609	+				+2.1
3,144,744	+				+2.0
3,144,745	-		PP_2760	0.15	-0.8
3,145,178	+		PP_2760	0.59	-2.5
3,145,178	+		PP_2760	0.59	+0.5
3,145,202	+				+2.0
3,145,202	+		PP_2760	0.62	-1.0
3,145,232	-		PP_2760	0.65	-2.1
3,145,259	+		PP_2760	0.68	-1.7
3,145,274	+		PP_2760	0.69	-0.1
3,145,274	+		PP_2760	0.69	+0.2
3,145,275	-		PP_2760	0.69	-1.4
3,145,679	-		PP_2761	0.10	-1.1
3,145,738	+		PP_2761	0.16	+1.6
3,145,785	+		PP_2761	0.21	+1.1
3,145,884	+		PP_2761	0.31	-2.8
3,145,885	-		PP_2761	0.31	-2.6
3,145,885	-		PP_2761	0.31	-0.4
3,145,961	+		PP_2761	0.39	-0.4
3,145,961	+		PP_2761	0.39	-0.5
3,145,962	-		PP_2761	0.39	-2.5
3,146,047	-		PP_2761	0.48	+1.4
3,146,047	-		PP_2761	0.48	-1.9
3,146,149	+		PP_2761	0.58	+0.3
3,146,431	+		PP_2761	0.86	-1.6
3,146,432	-		PP_2761	0.87	-1.5
3,146,432	-		PP_2761	0.87	-1.6