Strain Fitness in Pseudomonas putida KT2440 around PP_2743

Experiment: P. putida PUT 7 MOI 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2741 and PP_2742 are separated by 67 nucleotidesPP_2742 and PP_2743 overlap by 4 nucleotidesPP_2743 and PP_2744 are separated by 195 nucleotides PP_2741: PP_2741 - conserved membrane protein of unknown function, at 3,123,615 to 3,125,252 _2741 PP_2742: PP_2742 - conserved protein of unknown function, at 3,125,320 to 3,125,679 _2742 PP_2743: PP_2743 - Acetyltransferase, GNAT family, at 3,125,676 to 3,126,269 _2743 PP_2744: PP_2744 - Ribose-phosphate pyrophosphokinase family protein, at 3,126,465 to 3,127,424 _2744 Position (kb) 3125 3126 3127Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3124.755 kb on + strand, within PP_2741at 3124.895 kb on + strand, within PP_2741at 3124.895 kb on + strand, within PP_2741at 3124.895 kb on + strand, within PP_2741at 3124.895 kb on + strand, within PP_2741at 3124.896 kb on - strand, within PP_2741at 3124.896 kb on - strand, within PP_2741at 3124.896 kb on - strand, within PP_2741at 3124.977 kb on - strand, within PP_2741at 3125.145 kb on + strandat 3125.145 kb on + strandat 3125.209 kb on - strandat 3125.284 kb on + strandat 3125.285 kb on - strandat 3125.292 kb on + strandat 3125.292 kb on + strandat 3125.368 kb on + strand, within PP_2742at 3125.498 kb on + strand, within PP_2742at 3125.498 kb on + strand, within PP_2742at 3125.498 kb on + strand, within PP_2742at 3125.567 kb on + strand, within PP_2742at 3125.570 kb on + strand, within PP_2742at 3125.571 kb on - strand, within PP_2742at 3125.605 kb on + strand, within PP_2742at 3125.606 kb on - strand, within PP_2742at 3125.606 kb on - strand, within PP_2742at 3125.713 kb on + strandat 3125.714 kb on - strandat 3125.718 kb on + strandat 3125.718 kb on + strandat 3125.719 kb on - strandat 3125.719 kb on - strandat 3125.722 kb on + strandat 3125.722 kb on + strandat 3125.723 kb on - strandat 3125.830 kb on + strand, within PP_2743at 3125.844 kb on + strand, within PP_2743at 3125.845 kb on - strand, within PP_2743at 3125.845 kb on - strand, within PP_2743at 3125.845 kb on - strand, within PP_2743at 3125.946 kb on + strand, within PP_2743at 3125.947 kb on - strand, within PP_2743at 3125.947 kb on - strand, within PP_2743at 3125.947 kb on - strand, within PP_2743at 3125.947 kb on - strand, within PP_2743at 3125.947 kb on - strand, within PP_2743at 3125.950 kb on + strand, within PP_2743at 3125.950 kb on + strand, within PP_2743at 3125.950 kb on + strand, within PP_2743at 3125.950 kb on + strand, within PP_2743at 3125.950 kb on + strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.951 kb on - strand, within PP_2743at 3125.965 kb on - strand, within PP_2743at 3125.965 kb on - strand, within PP_2743at 3125.980 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.037 kb on + strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.038 kb on - strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.041 kb on + strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.042 kb on - strand, within PP_2743at 3126.177 kb on + strand, within PP_2743at 3126.177 kb on + strand, within PP_2743at 3126.177 kb on + strand, within PP_2743at 3126.178 kb on - strand, within PP_2743at 3126.178 kb on - strand, within PP_2743at 3126.181 kb on + strand, within PP_2743at 3126.182 kb on - strand, within PP_2743at 3126.263 kb on + strandat 3126.310 kb on + strandat 3126.310 kb on + strandat 3126.311 kb on - strandat 3126.333 kb on + strandat 3126.341 kb on + strandat 3126.342 kb on - strandat 3126.343 kb on + strandat 3126.343 kb on + strandat 3126.344 kb on - strandat 3126.344 kb on - strandat 3126.344 kb on - strandat 3126.955 kb on - strand, within PP_2744at 3127.110 kb on - strand, within PP_2744at 3127.110 kb on - strand, within PP_2744at 3127.110 kb on - strand, within PP_2744at 3127.110 kb on - strand, within PP_2744at 3127.110 kb on - strand, within PP_2744at 3127.110 kb on - strand, within PP_2744at 3127.126 kb on + strand, within PP_2744at 3127.127 kb on - strand, within PP_2744at 3127.136 kb on - strand, within PP_2744at 3127.206 kb on + strand, within PP_2744at 3127.206 kb on + strand, within PP_2744at 3127.206 kb on + strand, within PP_2744at 3127.207 kb on - strand, within PP_2744at 3127.207 kb on - strand, within PP_2744at 3127.241 kb on - strand, within PP_2744

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Per-strain Table

Position Strand Gene LocusTag Fraction P. putida PUT 7 MOI 1
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3,124,755 + PP_2741 0.70 +0.3
3,124,895 + PP_2741 0.78 +1.2
3,124,895 + PP_2741 0.78 +1.3
3,124,895 + PP_2741 0.78 -2.0
3,124,895 + PP_2741 0.78 +3.2
3,124,896 - PP_2741 0.78 -2.5
3,124,896 - PP_2741 0.78 -2.2
3,124,896 - PP_2741 0.78 +1.6
3,124,977 - PP_2741 0.83 +0.8
3,125,145 + -0.1
3,125,145 + -3.0
3,125,209 - +1.2
3,125,284 + +0.9
3,125,285 - -2.5
3,125,292 + -2.8
3,125,292 + +0.1
3,125,368 + PP_2742 0.13 -0.2
3,125,498 + PP_2742 0.49 -0.7
3,125,498 + PP_2742 0.49 -1.4
3,125,498 + PP_2742 0.49 +2.1
3,125,567 + PP_2742 0.69 -1.7
3,125,570 + PP_2742 0.69 -1.8
3,125,571 - PP_2742 0.70 +0.6
3,125,605 + PP_2742 0.79 -2.5
3,125,606 - PP_2742 0.79 +1.1
3,125,606 - PP_2742 0.79 +1.2
3,125,713 + -1.7
3,125,714 - +1.9
3,125,718 + +0.8
3,125,718 + +1.7
3,125,719 - -1.7
3,125,719 - +1.9
3,125,722 + +0.4
3,125,722 + +0.9
3,125,723 - -1.5
3,125,830 + PP_2743 0.26 -1.1
3,125,844 + PP_2743 0.28 -2.3
3,125,845 - PP_2743 0.28 -3.2
3,125,845 - PP_2743 0.28 -0.1
3,125,845 - PP_2743 0.28 -2.3
3,125,946 + PP_2743 0.45 +1.5
3,125,947 - PP_2743 0.46 -2.5
3,125,947 - PP_2743 0.46 -2.2
3,125,947 - PP_2743 0.46 +0.8
3,125,947 - PP_2743 0.46 +1.2
3,125,947 - PP_2743 0.46 -1.6
3,125,950 + PP_2743 0.46 -1.9
3,125,950 + PP_2743 0.46 -2.6
3,125,950 + PP_2743 0.46 +0.5
3,125,950 + PP_2743 0.46 -1.4
3,125,950 + PP_2743 0.46 -2.6
3,125,951 - PP_2743 0.46 -1.9
3,125,951 - PP_2743 0.46 -0.5
3,125,951 - PP_2743 0.46 -0.2
3,125,951 - PP_2743 0.46 +0.5
3,125,951 - PP_2743 0.46 +0.7
3,125,951 - PP_2743 0.46 +0.4
3,125,951 - PP_2743 0.46 -2.0
3,125,951 - PP_2743 0.46 -1.2
3,125,965 - PP_2743 0.49 -0.4
3,125,965 - PP_2743 0.49 -0.6
3,125,980 + PP_2743 0.51 -2.3
3,126,037 + PP_2743 0.61 +1.1
3,126,037 + PP_2743 0.61 +0.2
3,126,037 + PP_2743 0.61 -2.6
3,126,037 + PP_2743 0.61 -1.8
3,126,037 + PP_2743 0.61 -1.2
3,126,037 + PP_2743 0.61 -2.0
3,126,038 - PP_2743 0.61 +1.3
3,126,038 - PP_2743 0.61 -0.5
3,126,038 - PP_2743 0.61 +0.1
3,126,038 - PP_2743 0.61 +0.8
3,126,038 - PP_2743 0.61 +2.4
3,126,038 - PP_2743 0.61 -2.3
3,126,038 - PP_2743 0.61 +2.6
3,126,041 + PP_2743 0.61 +1.7
3,126,041 + PP_2743 0.61 +0.5
3,126,041 + PP_2743 0.61 -1.4
3,126,041 + PP_2743 0.61 -3.1
3,126,041 + PP_2743 0.61 +1.5
3,126,041 + PP_2743 0.61 -0.9
3,126,041 + PP_2743 0.61 -1.6
3,126,042 - PP_2743 0.62 -1.8
3,126,042 - PP_2743 0.62 +1.5
3,126,042 - PP_2743 0.62 -3.0
3,126,042 - PP_2743 0.62 +0.7
3,126,042 - PP_2743 0.62 +0.5
3,126,042 - PP_2743 0.62 +0.6
3,126,042 - PP_2743 0.62 -1.6
3,126,042 - PP_2743 0.62 -1.2
3,126,042 - PP_2743 0.62 -2.7
3,126,042 - PP_2743 0.62 +0.6
3,126,177 + PP_2743 0.84 +0.0
3,126,177 + PP_2743 0.84 -2.6
3,126,177 + PP_2743 0.84 -0.1
3,126,178 - PP_2743 0.85 -1.9
3,126,178 - PP_2743 0.85 -0.5
3,126,181 + PP_2743 0.85 +0.5
3,126,182 - PP_2743 0.85 -0.6
3,126,263 + -2.1
3,126,310 + -2.2
3,126,310 + -1.1
3,126,311 - +0.8
3,126,333 + +1.9
3,126,341 + -0.4
3,126,342 - +0.5
3,126,343 + +0.1
3,126,343 + +1.4
3,126,344 - -1.8
3,126,344 - -1.6
3,126,344 - -0.1
3,126,955 - PP_2744 0.51 +1.2
3,127,110 - PP_2744 0.67 +1.4
3,127,110 - PP_2744 0.67 +0.5
3,127,110 - PP_2744 0.67 +1.5
3,127,110 - PP_2744 0.67 -1.6
3,127,110 - PP_2744 0.67 -2.4
3,127,110 - PP_2744 0.67 -1.4
3,127,126 + PP_2744 0.69 -1.1
3,127,127 - PP_2744 0.69 -1.6
3,127,136 - PP_2744 0.70 -0.4
3,127,206 + PP_2744 0.77 +0.4
3,127,206 + PP_2744 0.77 +0.8
3,127,206 + PP_2744 0.77 -1.6
3,127,207 - PP_2744 0.77 +0.5
3,127,207 - PP_2744 0.77 +0.7
3,127,241 - PP_2744 0.81 +1.1

Or see this region's nucleotide sequence