Strain Fitness in Pseudomonas putida KT2440 around PP_2733

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,116,004	+		PP_2732	0.49	+0.6
3,116,004	+		PP_2732	0.49	-0.4
3,116,202	+		PP_2732	0.61	-1.8
3,116,203	-		PP_2732	0.62	-0.1
3,116,223	+		PP_2732	0.63	+0.1
3,116,272	-		PP_2732	0.66	-0.9
3,116,349	-		PP_2732	0.71	-0.5
3,116,421	+		PP_2732	0.76	-1.9
3,116,422	-		PP_2732	0.76	-1.9
3,116,433	+		PP_2732	0.77	+1.5
3,116,538	+		PP_2732	0.83	-0.4
3,116,538	+		PP_2732	0.83	-1.5
3,116,540	+		PP_2732	0.84	+0.1
3,116,541	-		PP_2732	0.84	+0.2
3,116,629	-		PP_2732	0.89	+2.4
3,116,629	-		PP_2732	0.89	-1.7
3,116,629	-		PP_2732	0.89	-2.2
3,116,691	+				+1.0
3,116,882	+				-0.2
3,116,966	+		PP_2733	0.12	-2.8
3,116,966	+		PP_2733	0.12	+1.2
3,117,027	-		PP_2733	0.25	+0.2
3,117,027	-		PP_2733	0.25	-0.4
3,117,027	-		PP_2733	0.25	+1.1
3,117,031	-		PP_2733	0.26	-2.7
3,117,031	-		PP_2733	0.26	-0.7
3,117,031	-		PP_2733	0.26	-1.0
3,117,031	-		PP_2733	0.26	-2.3
3,117,031	-		PP_2733	0.26	-0.3
3,117,031	-		PP_2733	0.26	-0.1
3,117,031	-		PP_2733	0.26	-2.4
3,117,141	-		PP_2733	0.48	-0.4
3,117,338	+		PP_2733	0.88	-1.7
3,117,338	+		PP_2733	0.88	-1.9
3,117,501	-				+1.4
3,117,603	-		PP_2734	0.18	-0.4
3,117,708	-		PP_2734	0.26	+1.9
3,117,708	-		PP_2734	0.26	+3.7
3,117,717	+		PP_2734	0.27	-1.3
3,117,778	+		PP_2734	0.32	-1.2
3,117,778	+		PP_2734	0.32	-0.9
3,117,825	-		PP_2734	0.36	+0.7
3,117,836	+		PP_2734	0.37	-0.1
3,117,837	-		PP_2734	0.37	-2.1
3,117,966	+		PP_2734	0.48	+0.5
3,117,974	+		PP_2734	0.49	-1.7
3,117,974	+		PP_2734	0.49	-0.9
3,118,175	+		PP_2734	0.66	-2.4