Strain Fitness in Pseudomonas putida KT2440 around PP_2729

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,113,236	+				-0.1
3,113,236	+				+0.1
3,113,236	+				+1.5
3,113,238	+				-2.7
3,113,238	+				-1.9
3,113,239	-				+0.2
3,113,239	-				-2.5
3,113,248	-				+0.9
3,113,248	-				+1.0
3,113,289	+				+0.3
3,113,546	-		PP_2728	0.65	+2.4
3,113,709	+				+1.5
3,113,905	+				+0.9
3,113,906	-				+0.7
3,113,917	+				-1.1
3,114,012	+		PP_2729	0.25	+3.5
3,114,025	+		PP_2729	0.28	-2.0
3,114,081	+		PP_2729	0.38	+0.9
3,114,243	+		PP_2729	0.68	-1.0
3,114,243	+		PP_2729	0.68	-1.4
3,114,244	-		PP_2729	0.68	-0.6
3,114,244	-		PP_2729	0.68	-1.3
3,114,270	+		PP_2729	0.73	+0.1
3,114,271	-		PP_2729	0.73	-1.6
3,114,420	-				-2.5
3,114,485	+		PP_2730	0.13	-2.2
3,114,485	+		PP_2730	0.13	+0.1
3,114,486	-				+3.2
3,114,486	-		PP_2730	0.13	-1.4
3,114,822	+		PP_2730	0.76	-2.5
3,114,822	+		PP_2730	0.76	-2.3
3,114,823	-		PP_2730	0.76	-1.5
3,114,842	+		PP_2730	0.79	-0.7
3,114,843	-		PP_2730	0.80	+0.8
3,114,843	-		PP_2730	0.80	+0.5
3,114,843	-		PP_2730	0.80	+0.1
3,114,843	-		PP_2730	0.80	+0.5
3,115,382	-				-2.1