Strain Fitness in Pseudomonas putida KT2440 around PP_2704

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,094,910	+		PP_2703	0.35	-1.4
3,094,911	-		PP_2703	0.35	+1.6
3,094,981	+		PP_2703	0.40	-1.3
3,095,107	+		PP_2703	0.50	-1.7
3,095,108	-		PP_2703	0.50	+1.1
3,095,111	+		PP_2703	0.50	-1.8
3,095,111	+		PP_2703	0.50	-2.7
3,095,111	+		PP_2703	0.50	+1.4
3,095,111	+		PP_2703	0.50	+0.0
3,095,111	+		PP_2703	0.50	-2.7
3,095,111	+		PP_2703	0.50	-2.0
3,095,111	+		PP_2703	0.50	-2.1
3,095,112	-		PP_2703	0.50	-2.3
3,095,155	-		PP_2703	0.53	-2.3
3,095,240	-		PP_2703	0.60	-0.4
3,095,254	+		PP_2703	0.61	-0.4
3,095,266	+		PP_2703	0.62	-1.3
3,095,267	-		PP_2703	0.62	-0.4
3,095,267	-		PP_2703	0.62	-0.8
3,095,287	+		PP_2703	0.64	-1.5
3,095,326	-		PP_2703	0.67	+0.1
3,095,378	-		PP_2703	0.71	-0.6
3,095,378	-		PP_2703	0.71	-1.5
3,095,378	-		PP_2703	0.71	-0.7
3,095,446	+		PP_2703	0.76	-0.5
3,095,446	+		PP_2703	0.76	+0.0
3,095,447	-		PP_2703	0.76	-0.8
3,095,731	+				+0.8
3,095,761	+				+1.5
3,095,761	+				+0.4
3,095,762	-				-2.9
3,095,767	+				-0.6
3,095,875	+				+0.1
3,095,876	-				-2.8
3,095,876	-				-1.4
3,095,915	+		PP_2704	0.13	+0.1
3,096,134	-		PP_2704	0.31	-0.9
3,096,166	-		PP_2704	0.34	-2.0
3,096,263	-		PP_2704	0.42	-0.8
3,096,263	-		PP_2704	0.42	-0.1
3,096,263	-		PP_2704	0.42	-1.2
3,096,464	+		PP_2704	0.59	-0.3
3,096,465	-		PP_2704	0.59	-0.4
3,096,465	-		PP_2704	0.59	-0.1
3,096,507	-		PP_2704	0.63	-2.6
3,096,623	+		PP_2704	0.73	-1.6
3,096,785	+		PP_2704	0.86	+1.6
3,096,785	+		PP_2704	0.86	+1.1
3,096,786	-		PP_2704	0.86	-2.6
3,096,786	-		PP_2704	0.86	+0.5
3,096,786	-		PP_2704	0.86	-0.8
3,096,813	-		PP_2704	0.89	-0.3
3,096,813	-		PP_2704	0.89	-1.8
3,096,863	-				+0.2
3,097,141	+		PP_2705	0.43	-2.8
3,097,142	-		PP_2705	0.43	+0.5
3,097,143	+		PP_2705	0.43	-1.9
3,097,143	+		PP_2705	0.43	+0.4
3,097,144	-		PP_2705	0.44	-1.0
3,097,321	+				+1.8
3,097,438	-		PP_2706	0.16	+1.0