Strain Fitness in Pseudomonas putida KT2440 around PP_2703

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,093,530	-		PP_2702	0.51	-0.1
3,093,562	+		PP_2702	0.54	+3.4
3,093,598	+		PP_2702	0.57	+2.0
3,093,598	+		PP_2702	0.57	-0.1
3,093,598	+		PP_2702	0.57	+0.5
3,093,616	+		PP_2702	0.58	-0.3
3,093,616	+		PP_2702	0.58	-0.5
3,093,616	+		PP_2702	0.58	+0.3
3,093,616	+		PP_2702	0.58	+0.4
3,093,616	+		PP_2702	0.58	-0.2
3,093,617	-		PP_2702	0.59	+0.1
3,093,662	-		PP_2702	0.63	+0.4
3,093,662	-		PP_2702	0.63	-2.0
3,093,833	-		PP_2702	0.78	+1.1
3,093,904	+		PP_2702	0.84	-0.2
3,093,905	-		PP_2702	0.84	-2.5
3,093,905	-		PP_2702	0.84	+1.1
3,093,931	+		PP_2702	0.86	-0.2
3,093,971	-		PP_2702	0.90	-0.5
3,093,971	-		PP_2702	0.90	+0.9
3,094,070	+				+1.5
3,094,071	-				-0.4
3,094,158	+				-2.0
3,094,158	+				+0.5
3,094,381	-				+0.0
3,094,399	+				-1.7
3,094,422	-				+0.1
3,094,576	+				-0.2
3,094,577	-				-1.5
3,094,591	+		PP_2703	0.10	-0.3
3,094,607	+		PP_2703	0.11	-0.2
3,094,607	+		PP_2703	0.11	+1.0
3,094,910	+		PP_2703	0.35	-1.4
3,094,911	-		PP_2703	0.35	+1.6
3,094,981	+		PP_2703	0.40	-1.3
3,095,107	+		PP_2703	0.50	-1.7
3,095,108	-		PP_2703	0.50	+1.1
3,095,111	+		PP_2703	0.50	-1.8
3,095,111	+		PP_2703	0.50	-2.7
3,095,111	+		PP_2703	0.50	+1.4
3,095,111	+		PP_2703	0.50	+0.0
3,095,111	+		PP_2703	0.50	-2.7
3,095,111	+		PP_2703	0.50	-2.0
3,095,111	+		PP_2703	0.50	-2.1
3,095,112	-		PP_2703	0.50	-2.3
3,095,155	-		PP_2703	0.53	-2.3
3,095,240	-		PP_2703	0.60	-0.4
3,095,254	+		PP_2703	0.61	-0.4
3,095,266	+		PP_2703	0.62	-1.3
3,095,267	-		PP_2703	0.62	-0.4
3,095,267	-		PP_2703	0.62	-0.8
3,095,287	+		PP_2703	0.64	-1.5
3,095,326	-		PP_2703	0.67	+0.1
3,095,378	-		PP_2703	0.71	-0.6
3,095,378	-		PP_2703	0.71	-1.5
3,095,378	-		PP_2703	0.71	-0.7
3,095,446	+		PP_2703	0.76	-0.5
3,095,446	+		PP_2703	0.76	+0.0
3,095,447	-		PP_2703	0.76	-0.8
3,095,731	+				+0.8
3,095,761	+				+1.5
3,095,761	+				+0.4
3,095,762	-				-2.9
3,095,767	+				-0.6
3,095,875	+				+0.1
3,095,876	-				-2.8
3,095,876	-				-1.4
3,095,915	+		PP_2704	0.13	+0.1
3,096,134	-		PP_2704	0.31	-0.9
3,096,166	-		PP_2704	0.34	-2.0
3,096,263	-		PP_2704	0.42	-0.8
3,096,263	-		PP_2704	0.42	-0.1
3,096,263	-		PP_2704	0.42	-1.2
3,096,464	+		PP_2704	0.59	-0.3
3,096,465	-		PP_2704	0.59	-0.4
3,096,465	-		PP_2704	0.59	-0.1
3,096,507	-		PP_2704	0.63	-2.6
3,096,623	+		PP_2704	0.73	-1.6