Strain Fitness in Pseudomonas putida KT2440 around PP_2698

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,088,235	-		PP_2696	0.67	-0.2
3,088,235	-		PP_2696	0.67	-0.2
3,088,310	+		PP_2696	0.75	+0.4
3,088,533	+				-2.5
3,088,674	+				-1.4
3,088,689	+				+2.6
3,089,015	+		PP_2697	0.73	-0.3
3,089,022	+		PP_2697	0.74	+0.4
3,089,071	+		PP_2697	0.84	-3.9
3,089,071	+		PP_2697	0.84	+1.3
3,089,094	+		PP_2697	0.88	+0.2
3,089,094	+		PP_2697	0.88	+0.5
3,089,095	-		PP_2697	0.89	+0.7
3,089,095	-		PP_2697	0.89	+1.4
3,089,138	-				-0.3
3,089,155	+				+0.7
3,089,155	+				-0.3
3,089,156	-				+1.8
3,089,156	-				+0.1
3,089,156	-				-0.3
3,089,189	+				-2.5
3,089,251	-				+2.3
3,089,294	-		PP_2698	0.11	+2.4
3,089,294	-		PP_2698	0.11	+2.0
3,089,510	-				+0.8
3,089,572	+		PP_2698	0.38	+0.2
3,089,573	-		PP_2698	0.38	+3.1
3,089,579	+		PP_2698	0.39	+0.1
3,089,580	-		PP_2698	0.39	+0.5
3,089,580	-		PP_2698	0.39	-1.6
3,089,788	+		PP_2698	0.59	+0.4
3,089,788	+		PP_2698	0.59	-1.9
3,089,788	+		PP_2698	0.59	-0.3
3,089,788	+		PP_2698	0.59	-0.4
3,090,000	-		PP_2698	0.79	-0.6
3,090,249	+				-0.7
3,090,249	+				-2.3
3,090,354	+		PP_2699	0.11	+0.4
3,090,375	+		PP_2699	0.13	+1.1
3,090,402	+		PP_2699	0.15	+1.0
3,090,433	-		PP_2699	0.18	+1.2
3,090,570	+		PP_2699	0.31	-1.4
3,090,600	+		PP_2699	0.34	+1.7
3,090,618	+		PP_2699	0.36	-2.7
3,090,618	+		PP_2699	0.36	-2.9
3,090,619	-		PP_2699	0.36	-0.7
3,090,619	-		PP_2699	0.36	+1.0
3,090,633	+		PP_2699	0.37	-0.1
3,090,675	+		PP_2699	0.41	+0.6
3,090,675	+		PP_2699	0.41	+1.2
3,090,676	-		PP_2699	0.42	-2.5
3,090,735	+		PP_2699	0.47	+0.6
3,090,735	+		PP_2699	0.47	+0.7
3,090,824	-		PP_2699	0.56	+0.3
3,090,840	-		PP_2699	0.57	-2.7
3,090,853	-		PP_2699	0.58	-1.5
3,090,865	-		PP_2699	0.59	-2.0
3,090,880	+		PP_2699	0.61	-1.9
3,090,885	-		PP_2699	0.61	-1.5
3,090,925	+		PP_2699	0.65	-0.5
3,090,927	+		PP_2699	0.65	+1.1
3,090,927	+		PP_2699	0.65	-0.8
3,090,928	-		PP_2699	0.65	+0.0
3,090,999	-		PP_2699	0.72	+0.5
3,091,021	-		PP_2699	0.74	+0.8
3,091,021	-		PP_2699	0.74	-1.8