Strain Fitness in Pseudomonas putida KT2440 around PP_2691

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,079,796	+		PP_2689	0.26	-1.8
3,079,816	+		PP_2689	0.31	-0.6
3,079,817	-		PP_2689	0.32	+0.4
3,079,817	-		PP_2689	0.32	-1.1
3,079,829	+		PP_2689	0.35	-0.5
3,079,830	-		PP_2689	0.35	+0.8
3,079,847	+		PP_2689	0.40	+1.3
3,079,968	+		PP_2689	0.72	-2.3
3,079,991	+		PP_2689	0.78	-0.4
3,079,992	-		PP_2689	0.79	+1.6
3,079,992	-		PP_2689	0.79	+1.0
3,079,999	-		PP_2689	0.81	-2.6
3,080,197	-		PP_2690	0.14	-1.4
3,080,211	+		PP_2690	0.16	-0.8
3,080,245	+		PP_2690	0.21	+0.8
3,080,245	+		PP_2690	0.21	-3.3
3,080,246	-		PP_2690	0.21	-0.1
3,080,246	-		PP_2690	0.21	+1.4
3,080,246	-		PP_2690	0.21	-3.0
3,080,287	+		PP_2690	0.27	+1.2
3,080,287	+		PP_2690	0.27	+2.5
3,080,287	+		PP_2690	0.27	-2.7
3,080,287	+		PP_2690	0.27	-1.7
3,080,288	-		PP_2690	0.27	+2.6
3,080,288	-		PP_2690	0.27	+0.2
3,080,441	+		PP_2690	0.49	+0.2
3,080,442	-		PP_2690	0.49	+1.4
3,080,476	+		PP_2690	0.54	-0.2
3,080,771	-				-2.5
3,080,892	-				-0.2
3,081,010	+		PP_2691	0.12	-0.3
3,081,010	+		PP_2691	0.12	+0.8
3,081,011	-		PP_2691	0.13	-2.0
3,081,011	-		PP_2691	0.13	+1.0
3,081,042	+		PP_2691	0.14	-1.1
3,081,292	+		PP_2691	0.29	+3.3
3,081,293	-		PP_2691	0.29	-1.8
3,081,692	+		PP_2691	0.52	-0.3
3,081,775	+		PP_2691	0.57	+1.4
3,081,975	-		PP_2691	0.69	+0.5
3,081,982	+		PP_2691	0.69	+1.7
3,082,794	-		PP_2692	0.18	+0.4
3,082,827	-		PP_2692	0.20	+0.6
3,083,029	-		PP_2692	0.33	-0.4
3,083,050	-		PP_2692	0.34	-1.9
3,083,070	+		PP_2692	0.36	+1.4
3,083,283	-		PP_2692	0.49	-0.2
3,083,283	-		PP_2692	0.49	+0.1
3,083,290	-		PP_2692	0.50	-2.5
3,083,332	+		PP_2692	0.53	+1.9
3,083,332	+		PP_2692	0.53	+0.8