Strain Fitness in Pseudomonas putida KT2440 around PP_2635

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,012,582	+		PP_2633	0.15	+1.8
3,012,634	+		PP_2633	0.38	+0.2
3,012,982	-		PP_2634	0.31	+1.9
3,013,113	+		PP_2634	0.49	+0.4
3,013,113	+		PP_2634	0.49	-1.2
3,013,113	+		PP_2634	0.49	+0.5
3,013,168	+		PP_2634	0.57	+1.7
3,013,260	+		PP_2634	0.70	+0.7
3,013,377	+		PP_2634	0.86	-1.9
3,013,378	-		PP_2634	0.87	-2.5
3,013,398	+		PP_2634	0.89	+1.3
3,013,495	+				+0.9
3,013,496	-				+1.1
3,013,496	-				-0.5
3,013,496	-				-2.7
3,013,726	+				+0.6
3,013,802	+		PP_2635	0.13	-0.3
3,013,922	+		PP_2635	0.17	+0.9
3,013,922	+		PP_2635	0.17	-2.8
3,013,938	+		PP_2635	0.18	+0.1
3,014,093	-		PP_2635	0.24	+1.7
3,014,106	-		PP_2635	0.24	+1.9
3,014,121	-		PP_2635	0.25	+0.2
3,014,161	-		PP_2635	0.27	-0.9
3,014,192	+		PP_2635	0.28	-2.7
3,014,192	+		PP_2635	0.28	+1.7
3,014,220	-		PP_2635	0.29	+0.5
3,014,393	+				+0.7
3,014,394	-		PP_2635	0.35	-0.7
3,014,394	-		PP_2635	0.35	-0.2
3,014,394	-		PP_2635	0.35	+0.4
3,014,456	+		PP_2635	0.38	-1.6
3,014,456	+		PP_2635	0.38	-0.5
3,014,457	-		PP_2635	0.38	+0.3
3,014,457	-		PP_2635	0.38	-1.1
3,014,457	-		PP_2635	0.38	-0.9
3,014,457	-		PP_2635	0.38	-1.9
3,014,457	-		PP_2635	0.38	-1.6
3,014,457	-		PP_2635	0.38	-2.4
3,014,457	-		PP_2635	0.38	-2.0
3,014,457	-		PP_2635	0.38	+1.0
3,014,459	-		PP_2635	0.38	-1.1
3,014,459	-		PP_2635	0.38	+0.4
3,014,612	-				+1.7
3,014,612	-		PP_2635	0.44	-1.1
3,014,715	-		PP_2635	0.48	-2.2
3,014,715	-		PP_2635	0.48	+0.6
3,014,740	+		PP_2635	0.49	+0.6
3,014,740	+		PP_2635	0.49	-2.3
3,014,740	+		PP_2635	0.49	-2.3
3,014,885	+		PP_2635	0.54	-1.5
3,015,017	-		PP_2635	0.59	-1.5
3,015,017	-		PP_2635	0.59	+0.0
3,015,039	-		PP_2635	0.60	-0.4
3,015,039	-		PP_2635	0.60	+0.1
3,015,125	+		PP_2635	0.63	-0.9
3,015,125	+		PP_2635	0.63	-1.6
3,015,125	+		PP_2635	0.63	-2.0
3,015,125	+		PP_2635	0.63	+0.9
3,015,125	+		PP_2635	0.63	-1.2
3,015,125	+		PP_2635	0.63	+0.2
3,015,126	-				-0.3
3,015,126	-		PP_2635	0.63	-2.4
3,015,134	+		PP_2635	0.64	+2.1
3,015,135	-		PP_2635	0.64	-0.6
3,015,161	+		PP_2635	0.65	+0.9
3,015,219	-		PP_2635	0.67	+0.2
3,015,266	+		PP_2635	0.69	-1.0
3,015,267	-		PP_2635	0.69	-2.2
3,015,383	+		PP_2635	0.73	-0.9
3,015,383	+		PP_2635	0.73	+0.8
3,015,383	+		PP_2635	0.73	+0.1
3,015,383	+		PP_2635	0.73	+0.9
3,015,384	-		PP_2635	0.73	+0.1
3,015,384	-		PP_2635	0.73	+0.1
3,015,497	+				+1.1
3,015,497	+		PP_2635	0.78	-1.7
3,015,498	-		PP_2635	0.78	+1.5
3,015,666	+		PP_2635	0.84	-1.5
3,015,666	+		PP_2635	0.84	-0.8
3,015,703	-		PP_2635	0.86	-2.9
3,015,814	+		PP_2635	0.90	-2.4
3,016,019	+				+0.1
3,016,020	-				-1.9
3,016,088	-				-1.6
3,016,161	-				+0.3
3,016,268	+				+0.1
3,016,285	-				-2.6
3,016,342	+		PP_2636	0.12	-1.1
3,016,343	-		PP_2636	0.12	+0.1
3,016,391	-		PP_2636	0.14	+0.9
3,016,415	+		PP_2636	0.15	-2.7
3,016,451	+		PP_2636	0.16	-0.5
3,016,452	-		PP_2636	0.16	+1.8
3,016,502	+		PP_2636	0.19	-1.5
3,016,502	+		PP_2636	0.19	-1.1
3,016,527	+		PP_2636	0.20	-1.9
3,016,528	-		PP_2636	0.20	-1.6
3,016,528	-		PP_2636	0.20	-0.7
3,016,592	+		PP_2636	0.23	-1.9
3,016,592	+		PP_2636	0.23	-1.7
3,016,679	+		PP_2636	0.26	+0.7
3,016,679	+		PP_2636	0.26	+0.4
3,016,679	+		PP_2636	0.26	-0.2
3,016,680	-		PP_2636	0.26	+0.1
3,016,680	-		PP_2636	0.26	+2.4
3,016,680	-		PP_2636	0.26	+1.7
3,016,750	+		PP_2636	0.29	-0.5
3,016,750	+		PP_2636	0.29	-1.7
3,016,798	+		PP_2636	0.32	-0.4