Strain Fitness in Pseudomonas putida KT2440 around PP_2628

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
3,006,209	+		PP_2627	0.77	+1.4
3,006,210	-		PP_2627	0.77	+0.7
3,006,210	-		PP_2627	0.77	+1.5
3,006,233	+		PP_2627	0.78	-1.1
3,006,234	-		PP_2627	0.78	-0.2
3,006,331	-		PP_2627	0.80	-1.4
3,006,457	-		PP_2627	0.84	-0.4
3,006,457	-		PP_2627	0.84	+0.5
3,006,598	+		PP_2627	0.88	+0.5
3,006,598	+		PP_2627	0.88	-0.5
3,006,599	-		PP_2627	0.88	-3.2
3,006,648	-		PP_2627	0.89	+1.7
3,006,685	-				+0.3
3,006,704	+				+0.4
3,006,705	-				+0.1
3,006,728	+				-0.3
3,006,729	-				+1.3
3,006,729	-				+1.5
3,007,036	+				-0.2
3,007,119	+				-1.6
3,007,120	-				+0.3
3,007,191	+				-1.1
3,007,191	+				+0.1
3,007,191	+				-0.6
3,007,191	+				-2.3
3,007,192	-				-3.0
3,007,192	-				+2.0
3,007,192	-				-2.0
3,007,192	-				-2.8
3,007,195	+				+2.3
3,007,602	+		PP_2628	0.24	+1.5
3,007,609	+		PP_2628	0.25	-0.5
3,007,718	+		PP_2628	0.30	-2.0
3,007,718	+		PP_2628	0.30	-2.3
3,007,741	-		PP_2628	0.32	-0.5
3,007,741	-		PP_2628	0.32	-0.9
3,007,741	-		PP_2628	0.32	+0.5
3,007,863	+		PP_2628	0.38	-3.0
3,007,908	-		PP_2628	0.40	-1.5
3,008,006	-		PP_2628	0.45	-3.1
3,008,032	+		PP_2628	0.46	+2.5
3,008,032	+		PP_2628	0.46	-2.3
3,008,032	+		PP_2628	0.46	-2.3
3,008,033	-		PP_2628	0.46	-0.3
3,008,271	-		PP_2628	0.58	-2.5
3,008,271	-		PP_2628	0.58	+1.7
3,008,289	+		PP_2628	0.59	+0.1
3,008,289	+		PP_2628	0.59	-0.6
3,008,290	-		PP_2628	0.59	-1.5
3,008,370	+		PP_2628	0.63	+0.4
3,008,466	+		PP_2628	0.68	-2.2
3,008,467	-		PP_2628	0.68	-1.2
3,008,500	+		PP_2628	0.70	-1.8
3,008,501	-		PP_2628	0.70	+0.9
3,008,582	+		PP_2628	0.74	-0.3
3,008,817	+		PP_2628	0.86	-0.9
3,008,818	-		PP_2628	0.86	-2.0
3,008,818	-		PP_2628	0.86	+2.5
3,008,818	-		PP_2628	0.86	+0.7
3,008,860	-		PP_2628	0.88	-1.1
3,008,860	-		PP_2628	0.88	-0.2
3,008,860	-		PP_2628	0.88	-0.6
3,008,860	-		PP_2628	0.88	+0.7
3,008,922	-				+1.1
3,009,074	+				-0.2
3,009,095	+				-1.0
3,009,131	+				-0.5
3,009,189	+				+1.9
3,009,241	-				-1.6
3,009,337	+				-1.6
3,009,337	+				+2.3
3,009,377	+				+0.6
3,009,389	+				+0.8
3,009,502	+				-2.7
3,009,502	+				-0.7
3,009,503	-				+0.2
3,009,759	-				-0.6
3,009,759	-				+0.7
3,009,782	+				-2.0