Strain Fitness in Pseudomonas putida KT2440 around PP_2614

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,988,392	+				+0.4
2,988,596	-		PP_2613	0.22	-0.7
2,988,596	-		PP_2613	0.22	-1.4
2,988,596	-		PP_2613	0.22	-2.7
2,988,602	-		PP_2613	0.22	-0.3
2,988,607	+		PP_2613	0.23	-2.7
2,988,607	+		PP_2613	0.23	+0.2
2,988,607	+		PP_2613	0.23	+0.2
2,988,607	+		PP_2613	0.23	+1.6
2,988,607	+		PP_2613	0.23	+0.2
2,988,608	-				+1.6
2,988,608	-		PP_2613	0.23	+0.2
2,988,621	+		PP_2613	0.24	-0.5
2,988,622	-		PP_2613	0.24	-0.8
2,988,622	-		PP_2613	0.24	-1.7
2,989,153	+		PP_2613	0.80	-1.2
2,989,153	+		PP_2613	0.80	-0.4
2,989,154	-		PP_2613	0.80	-2.0
2,989,155	+		PP_2613	0.80	-0.9
2,989,155	+		PP_2613	0.80	+1.4
2,989,178	+		PP_2613	0.83	+1.0
2,989,179	-				+2.6
2,989,571	-		PP_2614	0.12	-2.6
2,989,580	+		PP_2614	0.12	-1.2
2,989,580	+		PP_2614	0.12	+0.9
2,989,581	-		PP_2614	0.12	+0.3
2,989,653	-		PP_2614	0.16	-0.4
2,989,806	-		PP_2614	0.23	-0.2
2,989,874	+		PP_2614	0.26	-2.9
2,989,875	-		PP_2614	0.26	-2.1
2,990,032	+				+3.2
2,990,032	+		PP_2614	0.33	-1.5
2,990,056	+		PP_2614	0.34	-1.8
2,990,102	-		PP_2614	0.36	-0.4
2,990,102	-		PP_2614	0.36	+0.2
2,990,102	-		PP_2614	0.36	-0.4
2,990,383	+		PP_2614	0.49	+0.3
2,990,844	+		PP_2614	0.71	-1.9
2,990,845	-		PP_2614	0.71	-2.2
2,991,209	-		PP_2614	0.88	-1.7
2,991,212	-		PP_2614	0.88	-2.0
2,991,212	-				+1.7
2,991,212	-		PP_2614	0.88	+0.9
2,991,212	-		PP_2614	0.88	+0.7
2,991,600	-				+0.4
2,991,600	-				-0.2
2,991,826	-		PP_2615	0.53	+1.0
2,991,826	-		PP_2615	0.53	+0.6
2,991,839	-		PP_2615	0.55	-1.8
2,992,270	+				-1.3
2,992,270	+				-0.1
2,992,270	+				-0.3
2,992,270	+				+0.1
2,992,373	-		PP_2616	0.20	-0.9