Strain Fitness in Pseudomonas putida KT2440 around PP_2599

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,968,670	+		PP_2597	0.24	+0.1
2,968,671	-		PP_2597	0.24	-0.1
2,968,671	-		PP_2597	0.24	+0.4
2,968,671	-		PP_2597	0.24	-3.0
2,968,781	+		PP_2597	0.42	+1.7
2,968,844	+		PP_2597	0.52	-1.0
2,968,845	-		PP_2597	0.53	+0.9
2,968,845	-		PP_2597	0.53	-1.2
2,968,845	-		PP_2597	0.53	+1.6
2,968,845	-		PP_2597	0.53	+3.4
2,969,000	+		PP_2597	0.78	-1.0
2,969,001	-		PP_2597	0.78	-0.7
2,969,143	+				+0.0
2,969,143	+				+0.8
2,969,143	+				-1.5
2,969,161	+				+3.2
2,969,162	-				+0.2
2,969,206	+				+0.4
2,969,206	+				+1.5
2,969,206	+				-0.3
2,969,206	+				+1.0
2,969,207	-				+1.1
2,969,207	-				-2.0
2,969,213	+				+0.8
2,969,213	+				-0.2
2,969,214	-				-3.0
2,969,214	-				+0.0
2,969,332	+				+1.1
2,969,689	+				+0.9
2,969,695	+				-2.4
2,969,735	+				+0.7
2,969,736	-				-1.2
2,969,745	+				+1.0
2,969,764	+				-0.1
2,969,764	+				-1.9
2,969,765	-				-1.9
2,969,765	-				-1.6
2,969,765	-				-0.3
2,969,811	+				+0.4
2,969,811	+				-2.6
2,970,034	+		PP_2599	0.16	+0.7
2,970,405	+		PP_2599	0.31	-0.5
2,970,426	+				+2.2
2,970,492	-		PP_2599	0.35	-1.4
2,970,492	-		PP_2599	0.35	+0.0
2,970,523	+		PP_2599	0.36	-0.5
2,970,524	-		PP_2599	0.36	-1.6
2,970,529	+		PP_2599	0.36	-0.6
2,970,529	+		PP_2599	0.36	-1.7
2,970,530	-		PP_2599	0.36	-2.8
2,971,108	+		PP_2599	0.60	-1.4
2,971,109	-		PP_2599	0.61	+0.9
2,971,127	+		PP_2599	0.61	+0.7
2,971,127	+		PP_2599	0.61	+0.4
2,971,127	+		PP_2599	0.61	-0.7
2,971,127	+		PP_2599	0.61	-1.9
2,971,128	-		PP_2599	0.61	-2.5
2,971,171	+		PP_2599	0.63	-0.4
2,971,171	+		PP_2599	0.63	+1.6
2,971,421	+		PP_2599	0.74	-0.5
2,971,422	-		PP_2599	0.74	-1.9
2,971,512	+		PP_2599	0.77	-1.6
2,971,513	-		PP_2599	0.77	-2.0
2,971,558	+		PP_2599	0.79	-0.9
2,971,558	+		PP_2599	0.79	+0.4
2,971,559	-		PP_2599	0.79	-1.0
2,971,570	+		PP_2599	0.80	-1.9
2,971,834	+				-0.7
2,971,834	+				-0.7
2,971,835	-				+1.2
2,971,835	-				-2.7
2,971,835	-				+0.8
2,971,916	+				-0.8
2,971,916	+				+0.4
2,971,917	-				-2.4
2,971,917	-				+0.6
2,971,940	+				-2.0
2,971,941	-				+0.5
2,971,951	+				-0.6
2,972,168	+				-0.7
2,972,168	+				-0.4
2,972,169	-				-0.9
2,972,204	+				-0.8
2,972,291	+				+2.1
2,972,292	-				-0.2
2,972,292	-				+2.3
2,972,327	-				-1.7
2,972,396	+		PP_2600	0.14	+1.0
2,972,396	+		PP_2600	0.14	+0.0
2,972,397	-		PP_2600	0.14	-1.0
2,972,433	+		PP_2600	0.16	-1.4
2,972,524	-		PP_2600	0.21	+0.0
2,972,613	-		PP_2600	0.26	-1.1
2,972,756	+		PP_2600	0.35	-2.4
2,972,756	+		PP_2600	0.35	-0.1
2,972,757	-		PP_2600	0.35	-1.7
2,972,762	+		PP_2600	0.35	-2.6
2,972,762	+		PP_2600	0.35	-2.6
2,972,765	+		PP_2600	0.35	+0.2
2,972,766	-		PP_2600	0.35	-0.1
2,972,766	-		PP_2600	0.35	-2.0
2,972,839	-		PP_2600	0.40	+0.9