Strain Fitness in Pseudomonas putida KT2440 around PP_2591

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,960,350	+		PP_2590	0.64	+0.3
2,960,350	+		PP_2590	0.64	-0.4
2,960,440	+		PP_2590	0.68	-1.4
2,960,502	-		PP_2590	0.70	+0.9
2,960,559	+		PP_2590	0.73	+0.8
2,960,560	-		PP_2590	0.73	-2.9
2,960,560	-		PP_2590	0.73	-1.0
2,960,596	+		PP_2590	0.74	+0.5
2,960,597	-		PP_2590	0.74	+2.6
2,960,600	-		PP_2590	0.74	+0.4
2,960,669	-		PP_2590	0.77	-2.1
2,960,681	-		PP_2590	0.78	-2.4
2,960,681	-		PP_2590	0.78	-1.7
2,960,779	+		PP_2590	0.82	-2.1
2,960,779	+		PP_2590	0.82	+0.4
2,960,866	+		PP_2590	0.86	+1.3
2,960,866	+		PP_2590	0.86	+1.6
2,960,867	-		PP_2590	0.86	-2.7
2,960,867	-		PP_2590	0.86	+0.0
2,961,008	+				-1.2
2,961,009	-				+1.2
2,961,009	-				+1.2
2,961,031	-				-0.4
2,961,233	-				-1.0
2,961,233	-				-1.9
2,961,302	-				-2.4
2,961,433	+		PP_2591	0.20	-2.9
2,961,434	-		PP_2591	0.20	-1.2
2,961,434	-				+1.6
2,961,434	-		PP_2591	0.20	-2.8
2,961,434	-		PP_2591	0.20	+0.6
2,961,766	+		PP_2591	0.52	+0.6
2,961,927	-		PP_2591	0.68	-1.1
2,961,927	-		PP_2591	0.68	+0.2
2,961,927	-		PP_2591	0.68	-1.4
2,961,928	+		PP_2591	0.68	-2.9
2,961,928	+		PP_2591	0.68	-1.2
2,962,074	+		PP_2591	0.82	-0.2
2,962,075	-		PP_2591	0.83	-3.5
2,962,090	+		PP_2591	0.84	+0.4
2,962,090	+		PP_2591	0.84	+1.1
2,962,091	-		PP_2591	0.84	+0.3
2,962,180	-				+1.2
2,962,246	-				+0.6
2,962,600	-		PP_2592	0.49	-2.0
2,962,777	-		PP_2592	0.72	-0.4
2,962,777	-		PP_2592	0.72	-0.2
2,962,820	+		PP_2592	0.78	+0.5
2,962,820	+		PP_2592	0.78	-1.2
2,962,962	+				-1.7
2,962,987	+				-2.0
2,962,988	-				-2.4
2,963,030	+				-0.8
2,963,030	+				-1.2
2,963,031	-				-1.5
2,963,031	-				+0.6
2,963,031	-				-1.4
2,963,075	+				-2.2
2,963,183	+		PP_2593	0.20	+0.4
2,963,184	-		PP_2593	0.21	-2.5