Strain Fitness in Pseudomonas putida KT2440 around PP_2574

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,939,780	-		PP_2572	0.44	-1.9
2,939,783	+		PP_2572	0.45	-1.8
2,939,783	+		PP_2572	0.45	-1.9
2,939,784	-		PP_2572	0.45	-0.4
2,940,295	+				+2.6
2,940,296	-		PP_2573	0.49	-1.6
2,940,296	-		PP_2573	0.49	-0.3
2,940,296	-		PP_2573	0.49	+0.0
2,940,296	-		PP_2573	0.49	-0.0
2,940,296	-		PP_2573	0.49	-1.8
2,940,424	-		PP_2573	0.82	-1.4
2,940,427	+		PP_2573	0.83	+0.3
2,940,427	+		PP_2573	0.83	-1.4
2,940,427	+		PP_2573	0.83	-0.5
2,940,428	-		PP_2573	0.83	+0.4
2,940,428	-		PP_2573	0.83	-1.9
2,940,428	-		PP_2573	0.83	-0.9
2,940,492	-				-0.8
2,940,492	-				+0.3
2,940,506	+				+0.1
2,940,506	+				+0.6
2,940,523	+				+0.2
2,940,524	-				-0.0
2,940,529	+				-1.3
2,940,530	-				-0.6
2,940,633	+				-1.6
2,940,633	+				-0.4
2,940,633	+				+0.0
2,940,646	+				-0.6
2,940,669	-				-2.4
2,940,715	+				+0.1
2,940,763	+				+0.8
2,940,763	+				+1.8
2,940,764	-				-1.6
2,940,764	-				-0.0
2,940,778	+				-1.7
2,940,779	-				+1.0
2,940,780	+				+1.4
2,940,780	+				-2.9
2,940,781	-				-0.3
2,940,781	-				-2.0
2,940,781	-				+1.0
2,940,800	-				-3.8
2,940,853	+				-3.2
2,940,853	+				-0.1
2,940,854	-				-0.4
2,940,854	-				-1.4
2,941,093	+		PP_2574	0.36	+1.6
2,941,220	-		PP_2574	0.49	+0.2
2,941,279	+		PP_2574	0.56	-1.2
2,941,279	+		PP_2574	0.56	-0.5
2,941,280	-		PP_2574	0.56	-1.2
2,941,387	+		PP_2574	0.68	-2.3
2,941,388	-		PP_2574	0.68	-2.2
2,941,388	-		PP_2574	0.68	-2.5
2,941,388	-		PP_2574	0.68	+0.5
2,941,388	-		PP_2574	0.68	+0.5
2,941,522	+		PP_2574	0.83	-2.7
2,941,523	-		PP_2574	0.83	+2.2
2,941,528	+		PP_2574	0.83	-2.1
2,941,706	+				-2.8
2,941,706	+				+1.0
2,941,706	+				+1.6
2,941,707	-				-1.4
2,941,707	-				-0.8
2,941,769	+				+1.0
2,941,932	-		PP_2575	0.43	-1.3
2,941,969	+		PP_2575	0.51	-2.4
2,942,238	+				+1.8
2,942,239	-				-0.1
2,942,282	+				+0.8
2,942,398	+				-3.2
2,942,398	+				+1.2
2,942,398	+				-1.9
2,942,399	-				-0.3
2,942,539	+				-0.5
2,942,539	+				-2.6
2,942,539	+				-1.1
2,942,539	+				+0.9
2,942,540	-				+0.1
2,942,540	-				-1.4
2,942,626	-				+0.3