Strain Fitness in Pseudomonas putida KT2440 around PP_2543

Experiment: P. putida PUT 7 MOI 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	P. putida PUT 7 MOI 1
2,887,997	+		PP_2542	0.53	+3.6
2,887,998	-		PP_2542	0.53	+1.1
2,888,289	+		PP_2542	0.73	-1.3
2,888,289	+		PP_2542	0.73	+0.2
2,888,364	+		PP_2542	0.79	-2.4
2,888,364	+		PP_2542	0.79	-2.4
2,888,511	-		PP_2542	0.89	+1.3
2,888,524	+		PP_2542	0.90	+0.7
2,888,536	-				-0.4
2,888,711	+				-0.8
2,888,711	+				+0.4
2,888,712	-				-0.8
2,888,727	+				-2.0
2,888,727	+				-0.9
2,888,727	+				+2.0
2,888,727	+				-0.4
2,888,727	+				-1.4
2,888,728	-				-1.8
2,888,728	-				+0.4
2,888,728	-				+0.8
2,888,729	+				+2.2
2,888,729	+				-2.3
2,888,729	+				-2.8
2,888,730	-				-1.0
2,888,786	-				-2.1
2,888,790	+				-2.2
2,888,790	+				-1.2
2,888,791	-				-0.4
2,888,791	-				+0.5
2,888,811	+				+0.3
2,888,811	+				-0.4
2,888,811	+				-0.0
2,888,812	-				-1.8
2,888,812	-				-1.3
2,888,812	-				+1.8
2,888,812	-				+1.2
2,888,885	+				+0.3
2,888,909	+				-0.4
2,888,909	+				-0.9
2,888,920	+				+0.4
2,888,984	-				+0.1
2,889,167	+		PP_2543	0.12	-1.8
2,889,347	+		PP_2543	0.25	+0.7
2,889,347	+		PP_2543	0.25	-1.0
2,889,347	+		PP_2543	0.25	-0.9
2,889,348	-		PP_2543	0.25	-1.8
2,889,348	-		PP_2543	0.25	-1.4
2,889,348	-		PP_2543	0.25	-1.6
2,889,458	+		PP_2543	0.33	-0.2
2,889,459	-		PP_2543	0.33	+0.4
2,889,759	-		PP_2543	0.54	-0.7
2,889,759	-		PP_2543	0.54	-1.2
2,889,759	-		PP_2543	0.54	-3.3
2,889,827	+		PP_2543	0.59	+0.1
2,889,828	-		PP_2543	0.59	-3.2
2,889,869	+		PP_2543	0.62	-2.8
2,889,870	-		PP_2543	0.62	+0.9
2,890,062	+		PP_2543	0.76	-1.4
2,890,062	+		PP_2543	0.76	+0.9
2,890,063	-				+2.6
2,890,063	-		PP_2543	0.76	+0.3
2,890,063	-		PP_2543	0.76	-1.8
2,890,063	-		PP_2543	0.76	-2.2
2,890,154	+		PP_2543	0.82	-1.4
2,890,155	-		PP_2543	0.82	+0.7
2,890,155	-		PP_2543	0.82	+0.1
2,890,219	-		PP_2543	0.87	-0.8
2,890,253	+		PP_2543	0.89	+0.5
2,890,253	+		PP_2543	0.89	-2.8
2,890,254	-		PP_2543	0.89	-0.0
2,890,254	-		PP_2543	0.89	-1.0
2,890,390	+				-0.2
2,890,403	+				+0.6
2,890,404	-				-0.6
2,890,567	-		PP_2544	0.79	+1.7
2,890,567	-		PP_2544	0.79	+1.1
2,890,628	+				-0.1
2,890,667	+				+0.8
2,890,667	+				+0.7
2,890,668	-				-2.4
2,890,668	-				+0.3
2,890,668	-				-2.4
2,890,668	-				+0.5
2,890,672	+				+0.5
2,890,672	+				-0.9
2,890,672	+				+1.6
2,890,672	+				-0.2
2,890,673	-				-2.6
2,890,673	-				+0.1
2,890,673	-				-1.6
2,890,680	+				-2.6
2,890,681	-				-0.1
2,890,681	-				-2.4
2,890,681	-				-1.7
2,890,681	-				+1.2
2,890,681	-				+1.1
2,890,681	-				-1.6
2,890,681	-				+0.5
2,890,724	+				-0.9
2,891,048	+		PP_2545	0.47	-2.0
2,891,216	+		PP_2545	0.68	-2.0
2,891,216	+		PP_2545	0.68	+1.9
2,891,217	-		PP_2545	0.68	+0.7
2,891,217	-		PP_2545	0.68	-2.1
2,891,270	+		PP_2545	0.74	-2.0
2,891,270	+		PP_2545	0.74	-2.3
2,891,270	+		PP_2545	0.74	-2.5
2,891,270	+		PP_2545	0.74	-1.8
2,891,270	+		PP_2545	0.74	-1.8
2,891,270	+		PP_2545	0.74	+0.6
2,891,339	+		PP_2545	0.83	-1.4
2,891,339	+		PP_2545	0.83	-3.1
2,891,387	+		PP_2545	0.89	-2.9
2,891,387	+		PP_2545	0.89	-2.9
2,891,388	-		PP_2545	0.89	-0.3